Gene omics information

Query gene ID At5g55930
Gene name OPT1 (OLIGOPEPTIDE TRANSPORTER 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9095.1At5g55930835691OPT1 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterS.X.H.G.
0.8894.0At5g15600831412SP1L4 (SPIRAL1-LIKE4)SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.S.X.H.G.
0.8693.1At3g04700819628unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8592.4At2g02720814801pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOS.X.H.G.
0.8491.9At2g24450816981FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)F:molecular_function unknown;P:N-terminal protein myristoylation;C:anchored to membrane;PBMOFVAS.X.H.G.
0.8491.9At5g47000834746peroxidase, putativeF:xylan 1,4-beta-xylosidase activity, peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOBMS.X.H.G.
0.8491.9At5g15140831366aldose 1-epimerase family proteinF:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVAS.X.H.G.
0.8491.9At5g50830835155unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVAS.X.H.G.
0.8391.4At5g39880833985unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8391.4At2g31500817708CPK24member of Calcium Dependent Protein KinaseS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
113.799.9GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
110.099.9GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
103.999.9E-ATMX-35-raw-cel-1574334848
93.699.9GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
92.499.9GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
92.099.9GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
89.499.9E-MEXP-1138-raw-cel-1432773066
88.899.9GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
87.699.9E-MEXP-1138-raw-cel-1432773130
87.499.9E-MEXP-1138-raw-cel-1432772522
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.665e-111402At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterC.G.S.X.
0.062e-1171At5g64410836562OPT4 (OLIGOPEPTIDE TRANSPORTER 4)oligopeptide transporterC.G.S.X.
0.038e-859At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterC.G.S.X.
0.041e-656At4g10770826672OPT7 (OLIGOPEPTIDE TRANSPORTER 7)oligopeptide transporterC.G.S.X.
0.077e-550At5g53520835434ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8)oligopeptide transporterC.G.S.X.
0.027e-550At1g09930837525ATOPT2oligopeptide transporterC.G.S.X.
0.017e-240At5g53510835433ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9)oligopeptide transporterC.G.S.X.
0.013e-138At5g39390833935leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.043e-138At4g16370827332ATOPT3 (OLIGOPEPTIDE TRANSPORTER)Encodes an oligopeptide transporter involved in metal homeostasis.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-759Glycine maxGmaAffx.50740.1.S1_atBM085219--1e-8At5g55930OPT1 (OLIGOPEPTIDE TRANSPORTER 1)C.G.S.X.
0.012e+034Hordeum vulgareContig8034_atContig8034--4e-8At3g22320NRPB5C.G.S.X.
0.101e-20103Oryza sativaOs08g0492000AK100814.1-Oligopeptide transporter OPT superfamily protein6e-21At5g55930OPT1 (OLIGOPEPTIDE TRANSPORTER 1)C.G.S.X.
0.092e-656Populus trichocarpaPtpAffx.201296.1.S1_s_atpmrna2575oligopeptide transporter OPT family /// oligopeptide transporter OPT family-5e-15At4g26590OPT5 (OLIGOPEPTIDE TRANSPORTER 5)C.G.S.X.
0.041e-346Triticum aestivumTa.8599.1.A1_atBQ162109--2e-11At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)C.G.S.X.
0.029e-857Vitis vinifera1613916_atCF404702hypothetical protein LOC100250922-1e-24At5g64410OPT4 (OLIGOPEPTIDE TRANSPORTER 4)C.G.S.X.
0.011e-138Zea maysZm.9255.1.S1_atCF632616hypothetical protein LOC100191322-2e-17At1g50940ETFALPHA (electron transfer flavoprotein alpha)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage