CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55930

Gene name OPT1 (OLIGOPEPTIDE TRANSPORTER 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.90 95.1 At5g55930 835691 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter S.X. H.G.
0.88 94.0 At5g15600 831412 SP1L4 (SPIRAL1-LIKE4) SPIRAL1-LIKE4 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. S.X. H.G.
0.86 93.1 At3g04700 819628 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At2g02720 814801 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.84 91.9 At2g24450 816981 FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR) F:molecular_function unknown;P:N-terminal protein myristoylation;C:anchored to membrane;PBMOFVA S.X. H.G.
0.84 91.9 At5g47000 834746 peroxidase, putative F:xylan 1,4-beta-xylosidase activity, peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.84 91.9 At5g15140 831366 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA S.X. H.G.
0.84 91.9 At5g50830 835155 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.83 91.4 At5g39880 833985 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.83 91.4 At2g31500 817708 CPK24 member of Calcium Dependent Protein Kinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
113.7 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
110.0 99.9 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
103.9 99.9 E-ATMX-35-raw-cel-1574334848
93.6 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
92.4 99.9 GSM154505 Arabidopsis hydrated pollen grains rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
92.0 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
89.4 99.9 E-MEXP-1138-raw-cel-1432773066
88.8 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
87.6 99.9 E-MEXP-1138-raw-cel-1432773130
87.4 99.9 E-MEXP-1138-raw-cel-1432772522
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.66 5e-111 402 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter C.G. S.X.
0.06 2e-11 71 At5g64410 836562 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) oligopeptide transporter C.G. S.X.
0.03 8e-8 59 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter C.G. S.X.
0.04 1e-6 56 At4g10770 826672 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) oligopeptide transporter C.G. S.X.
0.07 7e-5 50 At5g53520 835434 ATOPT8 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 8) oligopeptide transporter C.G. S.X.
0.02 7e-5 50 At1g09930 837525 ATOPT2 oligopeptide transporter C.G. S.X.
0.01 7e-2 40 At5g53510 835433 ATOPT9 (ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 9) oligopeptide transporter C.G. S.X.
0.01 3e-1 38 At5g39390 833935 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.04 3e-1 38 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-7 59 Glycine max GmaAffx.50740.1.S1_at BM085219 - - 1e-8 At5g55930 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig8034_at Contig8034 - - 4e-8 At3g22320 NRPB5 C.G. S.X.
0.10 1e-20 103 Oryza sativa Os08g0492000 AK100814.1 - Oligopeptide transporter OPT superfamily protein 6e-21 At5g55930 OPT1 (OLIGOPEPTIDE TRANSPORTER 1) C.G. S.X.
0.09 2e-6 56 Populus trichocarpa PtpAffx.201296.1.S1_s_at pmrna2575 oligopeptide transporter OPT family /// oligopeptide transporter OPT family - 5e-15 At4g26590 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) C.G. S.X.
0.04 1e-3 46 Triticum aestivum Ta.8599.1.A1_at BQ162109 - - 2e-11 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.02 9e-8 57 Vitis vinifera 1613916_at CF404702 hypothetical protein LOC100250922 - 1e-24 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.01 1e-1 38 Zea mays Zm.9255.1.S1_at CF632616 hypothetical protein LOC100191322 - 2e-17 At1g50940 ETFALPHA (electron transfer flavoprotein alpha) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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