Gene omics information

Query gene ID At5g55920
Gene name nucleolar protein, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4862.5At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAS.X.H.G.
0.5873.8At1g74260843766PUR4 (purine biosynthesis 4)Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.S.X.H.G.
0.5065.3At1g50510841473indigoidine synthase A family proteinF:unknown;P:biological_process unknown;C:plasma membrane;OBFMPS.X.H.G.
0.4862.5At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4355.3At4g19185827657integral membrane family proteinF:unknown;P:unknown;C:membrane;BPOAMS.X.H.G.
0.4152.4At5g45590834597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOS.X.H.G.
0.4050.8At5g09270830786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3948.4At4g35620829714CYCB2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVBS.X.H.G.
0.3846.7At4g16430827337basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOS.X.H.G.
0.3643.6At2g32910817853-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
402.0100.0GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
157.499.9GSM133777Lindsey_1-4_globular-basal_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
128.499.9GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
115.699.9GSM133779Lindsey_1-5_globular-basal_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
110.299.9GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
90.999.9GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
68.599.9GSM133772Lindsey_1-24_torpedo-apical_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
68.199.9GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
62.899.8GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
53.799.8GSM133778Lindsey_1-2_globular-apical_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.520862At4g26600828767nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAC.G.S.X.
0.031e-346At2g37610818338unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.014e-344At2g17110816215unknown proteinF:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFBOC.G.S.X.
0.014e-344At1g22970838904unknown proteinF:unknown;P:unknown;C:unknown;MPFOC.G.S.X.
0.012e-242At3g06520819830agenet domain-containing proteinF:RNA binding;P:unknown;C:cellular_component unknown;POC.G.S.X.
0.012e-242At2g16980816201tetracycline transporterF:tetracycline transporter activity;P:response to antibiotic, tetracycline transport;C:endomembrane system, integral to membrane;BOMPAFC.G.S.X.
0.012e-242At1g24764839083ATMAP70-2 (microtubule-associated proteins 70-2)Member of the MAP70 protein family.C.G.S.X.
0.017e-240At5g49400835000zinc knuckle (CCHC-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxPsAffx.psZS008xC17f_atPsAffx.psZS008xC17f--7e-4At1g12665-C.G.S.X.
0.102e-1687Hordeum vulgareContig8108_atContig8108--3e-21At4g26600nucleolar protein, putativeC.G.S.X.
0.042e-656Oryza sativaOs09g0551300AK066732.1-16S rRNA m5C967 methyltransferase domaincontaining protein1e-6At5g55920nucleolar protein, putativeC.G.S.X.
0.414e-109397Populus trichocarpaPtpAffx.38773.1.A1_atCV266449hypothetical protein-2e-109At5g55920nucleolar protein, putativeC.G.S.X.
0.021e+036Triticum aestivumTaAffx.80876.1.S1_atCA691621--2e-1At3g23230ethylene-responsive factor, putativeC.G.S.X.
0.081e-28127Vitis vinifera1611535_atCA810934--9e-29At4g26600nucleolar protein, putativeC.G.S.X.
0.118e-1581Zea maysZm.731.1.A1_atCA404803--1e-22At4g26600nucleolar protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0008283The multiplication or reproduction of cells, resulting in the expansion of a cell population.
XGO:0009965The process by which the anatomical structures of the leaf are generated and organized. Morphogenesis pertains to the creation of form.
XGO:0010015The process by which the anatomical structures of roots are generated and organized. Morphogenesis pertains to the creation of form. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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