CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55850

Gene name NOI

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g55850 835679 NOI NOI protein S.X. H.G.
0.35 41.6 At5g03460 831829 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.30 32.1 At3g12630 820443 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVF S.X. H.G.
0.27 26.2 At3g08710 820018 ATH9 (thioredoxin H-type 9) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cytosol, nucleus, plasma membrane;BOMPFAV S.X. H.G.
0.27 26.2 At3g46000 823743 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) Encodes depolymerizing factor 2. S.X. H.G.
0.22 17.5 At2g23090 816839 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.15 7.8 At1g14400 838002 UBC1 (UBIQUITIN CARRIER PROTEIN 1) ubiquitin carrier protein S.X. H.G.
0.14 6.8 At5g25540 832629 CID6 (CTC-Interacting Domain 6) Expressed protein contains PAM2 PABC interacting domain. S.X. H.G.
0.08 2.3 At1g73030 843634 VPS46.2 F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFO S.X. H.G.
0.07 1.9 At3g52560 824422 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.8 99.9 E-MEXP-509-raw-cel-829148703
18.5 99.5 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
13.1 99.4 E-MEXP-509-raw-cel-829148666
11.5 99.3 E-MEXP-1094-raw-cel-1379507473
10.2 99.2 E-MEXP-807-raw-cel-1173273032
10.2 99.2 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
9.9 99.1 E-ATMX-31-raw-cel-1516947916
9.9 99.1 E-MEXP-807-raw-cel-1173272921
9.6 99.1 GSM133736 Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
9.5 99.1 E-MEXP-509-raw-cel-829148385
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.27 8e-13 73 At5g63270 836447 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.20 1e-11 69 At5g40645 834064 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.12 7e-7 54 At4g35655 5008182 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.13 3e-6 52 At2g17660 816273 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.23 1e-5 50 At2g04410 814981 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO C.G. S.X.
0.08 3e-3 42 At3g48450 824004 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO C.G. S.X.
0.02 1e-2 40 At1g13460 837906 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative F:protein phosphatase type 2A regulator activity;P:signal transduction;C:chloroplast, protein phosphatase type 2A complex;MPOF C.G. S.X.
0.03 4e-2 38 At3g57700 824939 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-2 40 Glycine max GmaAffx.3553.1.S1_at AW423878 - - 2e-2 At5g55850 NOI C.G. S.X.
0.18 1e-9 61 Hordeum vulgare Contig3644_s_at Contig3644 - - 5e-9 At5g55850 NOI C.G. S.X.
0.25 4e-19 95 Oryza sativa OsAffx.27689.1.S1_at - - - 0 C.G. S.X.
0.23 3e-28 125 Populus trichocarpa PtpAffx.14176.2.S1_s_at CA821448 hypothetical protein - 4e-28 At5g55850 NOI C.G. S.X.
0.19 5e-17 87 Triticum aestivum TaAffx.57627.1.S1_at CA626431 - - 1e-3 At2g04410 - C.G. S.X.
0.19 1e-14 77 Vitis vinifera 1609556_at BQ792652 hypothetical protein LOC100254625 - 2e-9 At5g55850 NOI C.G. S.X.
0.14 2e-17 87 Zea mays Zm.2976.1.S1_at AF045033.1 nitrate-induced NOI protein - 2e-3 At2g04410 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0010167 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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