CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55770

Gene name DC1 domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At5g55770 835671 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PMO S.X. H.G.
0.60 75.7 At1g55390 841986 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMPFVA S.X. H.G.
0.50 65.3 At1g55700 842019 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMO S.X. H.G.
0.50 65.3 At2g28460 817394 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;POM S.X. H.G.
0.36 43.6 At3g01900 821263 CYP94B2 member of CYP94B S.X. H.G.
0.33 38.1 At4g27850 828898 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.3 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
138.2 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
137.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
135.4 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
130.6 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
125.3 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
116.3 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.3 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.2 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.47 2e-162 573 At1g44050 841006 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.53 1e-160 567 At5g55780 835672 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMFO C.G. S.X.
0.41 2e-134 480 At5g55800 835674 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;POM C.G. S.X.
0.50 2e-128 460 At4g10370 826629 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO C.G. S.X.
0.40 2e-125 450 At5g46670 834710 CHP-rich zinc finger protein, putative F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.46 1e-123 444 At3g26550 822263 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO C.G. S.X.
0.26 2e-27 125 At5g46660 834709 CHP-rich zinc finger protein, putative F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.15 8e-17 89 At2g13950 815879 DC1 domain-containing protein F:protein binding, zinc ion binding;P:response to cold;C:nucleus;PMO C.G. S.X.
0.11 1e-12 75 At5g02340 831744 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max GmaAffx.25145.1.A1_at AW830552 - - 2e-23 At1g08560 SYP111 (SYNTAXIN OF PLANTS 111) C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig23607_at Contig23607 - - 8e-15 At4g26470 calcium ion binding C.G. S.X.
0.02 5e-1 38 Oryza sativa Os06g0724500 AK068831.1 - WD40-like domain containing protein 9e-7 At4g35140 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 2e+0 36 Populus trichocarpa PtpAffx.30807.1.A1_at CV260510 hypothetical protein - 3e-1 At2g33855 unknown protein C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.20618.1.A1_at BQ168636 - - 7e-3 At3g14160 oxidoreductase C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1611990_at CF415757 hypothetical LOC100260122 - 4e+0 At5g66250 kinectin-related C.G. S.X.
0.01 2e+0 34 Zea mays Zm.15519.1.A1_a_at CD999562 - - 6e+0 At5g66005 Expressed protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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