Gene omics information

Query gene ID At5g55750
Gene name hydroxyproline-rich glycoprotein family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8290.9At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.9195.6At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8994.6At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8793.5At3g05260819690short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.8693.1At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.8592.4At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.8391.4At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.8290.9At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAS.X.H.G.
0.8190.4At4g27530828862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8190.4At5g22470832308NAD+ ADP-ribosyltransferaseF:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
547.3100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
497.5100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
473.3100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
447.8100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
443.3100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
401.2100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
397.6100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
336.3100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
258.3100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
231.5100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.034e-342At4g16830827389nuclear RNA-binding protein (RGGA)F:RNA binding;P:biological_process unknown;C:nucleus, cytoplasm;MBPOFVAC.G.S.X.
0.024e-342At3g14075820623lipase class 3 family proteinF:triacylglycerol lipase activity, carboxylesterase activity;P:lipid catabolic process, lipid metabolic process;C:unknown;MOPFBVAC.G.S.X.
0.013e-136At2g27660817312DC1 domain-containing proteinF:zinc ion binding;P:unknown;C:chloroplast;BPMOFVAC.G.S.X.
0.031e+034At5g23280832392TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMOC.G.S.X.
0.021e+034At5g53390835420unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAC.G.S.X.
0.011e+034At1g14390838001leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.014e+032At5g15890831446unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMFOVBAC.G.S.X.
0.024e+032At5g43080834324CYCA3F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.049e-238Glycine maxGmaAffx.54825.1.S1_atBI426954--5e-2At5g55750hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.042e+032Hordeum vulgareHVSMEg0008M24r2_atHVSMEg0008M24r2--3e-3At5g48630cyclin family proteinC.G.S.X.
0.052e+034Oryza sativaOsAffx.26099.1.S1_x_at---0C.G.S.X.
0.036e+032Populus trichocarpaPtpAffx.24845.1.A1_atCV243892--7e-2At1g54500rubredoxin family proteinC.G.S.X.
0.043e-136Triticum aestivumTa.30921.2.S1_atCN013158--1e+1At5g48190unknown proteinC.G.S.X.
0.041e+032Vitis vinifera1617017_atCD800521hypothetical protein LOC100242952-7e-5At5g15890unknown proteinC.G.S.X.
0.032e+032Zea maysZm.9716.1.A1_atBM351220--1e+0At2g37340RSZ33C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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