CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55750

Gene name hydroxyproline-rich glycoprotein family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.82 90.9 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.91 95.6 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO S.X. H.G.
0.89 94.6 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.87 93.5 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.86 93.1 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF S.X. H.G.
0.85 92.4 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.83 91.4 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.82 90.9 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA S.X. H.G.
0.81 90.4 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.81 90.4 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
547.3 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
497.5 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
473.3 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
447.8 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
443.3 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
401.2 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
397.6 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
336.3 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
258.3 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
231.5 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 4e-3 42 At4g16830 827389 nuclear RNA-binding protein (RGGA) F:RNA binding;P:biological_process unknown;C:nucleus, cytoplasm;MBPOFVA C.G. S.X.
0.02 4e-3 42 At3g14075 820623 lipase class 3 family protein F:triacylglycerol lipase activity, carboxylesterase activity;P:lipid catabolic process, lipid metabolic process;C:unknown;MOPFBVA C.G. S.X.
0.01 3e-1 36 At2g27660 817312 DC1 domain-containing protein F:zinc ion binding;P:unknown;C:chloroplast;BPMOFVA C.G. S.X.
0.03 1e+0 34 At5g23280 832392 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PMO C.G. S.X.
0.02 1e+0 34 At5g53390 835420 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMA C.G. S.X.
0.01 1e+0 34 At1g14390 838001 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 4e+0 32 At5g15890 831446 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFOVBA C.G. S.X.
0.02 4e+0 32 At5g43080 834324 CYCA3 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-2 38 Glycine max GmaAffx.54825.1.S1_at BI426954 - - 5e-2 At5g55750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEg0008M24r2_at HVSMEg0008M24r2 - - 3e-3 At5g48630 cyclin family protein C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.26099.1.S1_x_at - - - 0 C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.24845.1.A1_at CV243892 - - 7e-2 At1g54500 rubredoxin family protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.30921.2.S1_at CN013158 - - 1e+1 At5g48190 unknown protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1617017_at CD800521 hypothetical protein LOC100242952 - 7e-5 At5g15890 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.9716.1.A1_at BM351220 - - 1e+0 At2g37340 RSZ33 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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