CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55700

Gene name BAM4 (BETA-AMYLASE 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g55700 835664 BAM4 (BETA-AMYLASE 4) In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role. S.X. H.G.
0.67 81.6 At2g26430 817183 RCY1 (ARGININE-RICH CYCLIN 1) Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. S.X. H.G.
0.57 73.8 At3g10770 820246 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
0.40 50.8 At3g10030 820164 aspartate/glutamate/uridylate kinase family protein F:DNA binding;P:amino acid biosynthetic process;C:cytoplasm;BOPAMF S.X. H.G.
0.32 35.7 At4g34370 829587 ARI1 (ARIADNE) F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
226.5 100.0 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
159.3 99.9 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
113.4 99.9 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
92.8 99.9 GSM245256 4hr MOCK Replicate 3 GSE9702 Identification of putative targets of AP3/PI
63.2 99.8 GSM253194 RGA-GR-DEX-REP1 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
63.0 99.8 GSM253197 RGA-GR-MOCK-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
62.2 99.8 GSM245254 4hr MOCK Replicate 1 GSE9702 Identification of putative targets of AP3/PI
61.7 99.8 GSM253195 RGA-GR-MOCK-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
60.3 99.8 GSM47017 Ler 7 GSE2473 Small RNA biogenesis mutants
52.2 99.8 GSM253162 8h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At4g00490 827959 BAM2 (BETA-AMYLASE 2) Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype. C.G. S.X.
0.02 2e-1 38 At3g23920 821975 BAM1 (BETA-AMYLASE 1) Encodes a chloroplast beta-amylase. Is necessary for leaf starch breakdown in the absence of BAM3. C.G. S.X.
0.02 2e-1 38 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO C.G. S.X.
0.01 8e-1 36 At5g16715 831533 EMB2247 (embryo defective 2247) F:valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:chloroplast stroma, chloroplast;OBMAFP C.G. S.X.
0.01 8e-1 36 At4g36440 829796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 8e-1 36 At3g50180 824180 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFBVA C.G. S.X.
0.01 8e-1 36 At3g02340 821090 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVAB C.G. S.X.
0.01 8e-1 36 At1g06440 837156 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-3 44 Glycine max GmaAffx.3550.1.S1_at BM522852 - - 5e-51 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HVSMEk0006H23r2_at HVSMEk0006H23r2 - - 2e-1 At1g18760 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 4e-1 38 Oryza sativa Os05g0223600 9633.m01183 - - 3e-9 At5g02960 40S ribosomal protein S23 (RPS23B) C.G. S.X.
0.04 5e-6 54 Populus trichocarpa PtpAffx.154303.1.S1_s_at CX179495 hypothetical protein - 5e-29 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.02 2e-1 38 Triticum aestivum Ta.9004.1.A1_at BJ228767 - - 4e+0 At1g13620 unknown protein C.G. S.X.
0.07 4e-15 81 Vitis vinifera 1621861_at CF209183 - - 5e-15 At5g55700 BAM4 (BETA-AMYLASE 4) C.G. S.X.
0.01 1e+0 34 Zea mays Zm.264.2.A1_x_at CF012670 acetyl-coenzyme A carboxylase - 8e+0 At5g02890 transferase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0005983 The chemical reactions and pathways resulting in the breakdown of starch, the most important reserve polysaccharide in plants.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00005 Starch and maltose degradation
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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