Gene omics information

Query gene ID At5g55610
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5873.8At5g55610835655unknown proteinF:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, membrane;PS.X.H.G.
0.7888.6At3g27240822343cytochrome c1, putativeF:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:in 6 components;OBMFPS.X.H.G.
0.6478.9At5g66510836783GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.S.X.H.G.
0.6277.3At1g80230844363cytochrome c oxidase family proteinF:cytochrome-c oxidase activity;P:unknown;C:mitochondrial envelope, mitochondrion;MFPOS.X.H.G.
0.6176.7At5g67500836886VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.S.X.H.G.
0.6176.7At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFS.X.H.G.
0.6075.7At2g21870816723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBAS.X.H.G.
0.6075.7At3g06050819778PRXIIF (PEROXIREDOXIN IIF)Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.S.X.H.G.
0.5974.7At5g13430831184ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeF:metal ion binding;P:oxidation reduction;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;OBPMFAS.X.H.G.
0.5873.8At3g02090821084mitochondrial processing peptidase beta subunit, putativeF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.499.5GSM266663Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.799.4GSM266662Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.999.4GSM266664Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.799.3GSM265429Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.899.2E-MEXP-739-raw-cel-1099467384
9.899.1GSM265421Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.799.1GSM265420Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.199.1E-MEXP-739-raw-cel-1099467393
8.999.0GSM184909Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
8.899.0GSM265411Arabidopsis, whole roots, -Fe, replicate 1GSE10496Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-344At2g35780818150scpl26 (serine carboxypeptidase-like 26)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBC.G.S.X.
0.022e-344At2g48120819424PAC (PALE CRESS)The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist.C.G.S.X.
0.028e-342At5g22090832270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBVC.G.S.X.
0.018e-342At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
0.018e-342At1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.C.G.S.X.
0.013e-240At5g37350833709RIO1 family proteinF:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:unknown;C:unknown;MOFBPAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-242Glycine maxGmaAffx.60012.1.S1_atBM270096--4e-3At5g55610unknown proteinC.G.S.X.
0.036e-238Hordeum vulgareContig7615_s_atContig7615--8e-1At4g33520PAA1 (P-TYPE ATP-ASE 1)C.G.S.X.
0.032e-242Oryza sativaOsAffx.22062.1.S1_at---0C.G.S.X.
0.064e-240Populus trichocarpaPtp.2160.1.A1_atCV246005hypothetical protein-5e-2At5g55610unknown proteinC.G.S.X.
0.041e-138Triticum aestivumTaAffx.52063.1.S1_atCA713823--8e-3At2g42190unknown proteinC.G.S.X.
0.031e-136Vitis vinifera1617637_atCB974429hypothetical protein LOC100245010-1e-3At1g20220nucleic acid bindingC.G.S.X.
0.035e-238Zea maysZm.11659.1.S1_s_atBM379730hypothetical protein LOC100274758-6e-2At2g24550unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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