CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55610

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.58 73.8 At5g55610 835655 unknown protein F:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, membrane;P S.X. H.G.
0.78 88.6 At3g27240 822343 cytochrome c1, putative F:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:in 6 components;OBMFP S.X. H.G.
0.64 78.9 At5g66510 836783 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. S.X. H.G.
0.62 77.3 At1g80230 844363 cytochrome c oxidase family protein F:cytochrome-c oxidase activity;P:unknown;C:mitochondrial envelope, mitochondrion;MFPO S.X. H.G.
0.61 76.7 At5g67500 836886 VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. S.X. H.G.
0.61 76.7 At5g13450 831186 ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative F:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPF S.X. H.G.
0.60 75.7 At2g21870 816723 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBA S.X. H.G.
0.60 75.7 At3g06050 819778 PRXIIF (PEROXIREDOXIN IIF) Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions. S.X. H.G.
0.59 74.7 At5g13430 831184 ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative F:metal ion binding;P:oxidation reduction;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;OBPMFA S.X. H.G.
0.58 73.8 At3g02090 821084 mitochondrial processing peptidase beta subunit, putative F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.4 99.5 GSM266663 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
14.7 99.4 GSM266662 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
13.9 99.4 GSM266664 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.7 99.3 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
10.8 99.2 E-MEXP-739-raw-cel-1099467384
9.8 99.1 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.7 99.1 GSM265420 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
9.1 99.1 E-MEXP-739-raw-cel-1099467393
8.9 99.0 GSM184909 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
8.8 99.0 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-3 44 At2g35780 818150 scpl26 (serine carboxypeptidase-like 26) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB C.G. S.X.
0.02 2e-3 44 At2g48120 819424 PAC (PALE CRESS) The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. C.G. S.X.
0.02 8e-3 42 At5g22090 832270 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOPFBV C.G. S.X.
0.01 8e-3 42 At4g13340 826964 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVA C.G. S.X.
0.01 8e-3 42 At1g42550 840860 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. C.G. S.X.
0.01 3e-2 40 At5g37350 833709 RIO1 family protein F:protein serine/threonine kinase activity, catalytic activity, ATP binding;P:unknown;C:unknown;MOFBPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-2 42 Glycine max GmaAffx.60012.1.S1_at BM270096 - - 4e-3 At5g55610 unknown protein C.G. S.X.
0.03 6e-2 38 Hordeum vulgare Contig7615_s_at Contig7615 - - 8e-1 At4g33520 PAA1 (P-TYPE ATP-ASE 1) C.G. S.X.
0.03 2e-2 42 Oryza sativa OsAffx.22062.1.S1_at - - - 0 C.G. S.X.
0.06 4e-2 40 Populus trichocarpa Ptp.2160.1.A1_at CV246005 hypothetical protein - 5e-2 At5g55610 unknown protein C.G. S.X.
0.04 1e-1 38 Triticum aestivum TaAffx.52063.1.S1_at CA713823 - - 8e-3 At2g42190 unknown protein C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1617637_at CB974429 hypothetical protein LOC100245010 - 1e-3 At1g20220 nucleic acid binding C.G. S.X.
0.03 5e-2 38 Zea mays Zm.11659.1.S1_s_at BM379730 hypothetical protein LOC100274758 - 6e-2 At2g24550 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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