CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55570

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM S.X. H.G.
0.44 57.2 At2g36145 818187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P S.X. H.G.
0.38 46.7 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO S.X. H.G.
0.36 43.6 At1g62250 842522 unknown protein F:unknown;P:unknown;C:chloroplast;P S.X. H.G.
0.36 43.6 At4g39970 830158 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast, chloroplast stroma, chloroplast envelope;BOPMFAV S.X. H.G.
0.36 43.6 At2g34460 818009 flavin reductase-related F:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOPMFA S.X. H.G.
0.34 39.8 At2g32500 817811 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO S.X. H.G.
0.34 39.8 At4g26860 828793 pyridoxal phosphate binding F:pyridoxal phosphate binding;P:biological_process unknown;C:unknown;OBMFPA S.X. H.G.
0.32 35.7 At1g18060 838386 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.32 35.7 At2g37240 818301 - F:unknown;P:biological_process unknown;C:chloroplast;MPBOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
260.4 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
170.0 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
165.0 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
148.7 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
118.1 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
96.4 99.9 E-ATMX-25-raw-cel-1441077441
76.0 99.9 E-ATMX-25-raw-cel-1441077462
70.1 99.9 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
65.8 99.8 GSM133833 Walters_A-12-Kruger-MH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
64.5 99.8 GSM133822 Walters_A-01-Kruger-WL1_REP1 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-2 38 At2g01470 814675 STL2P (SEC12P-LIKE 2 PROTEIN) Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. C.G. S.X.
0.03 2e-1 36 At4g00080 828192 UNE11 (unfertilized embryo sac 11) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:double fertilization forming a zygote and endosperm;C:endomembrane system;P C.G. S.X.
0.01 2e-1 36 At2g37650 818342 scarecrow-like transcription factor 9 (SCL9) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBMO C.G. S.X.
0.03 2e-1 36 At1g27450 839636 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. C.G. S.X.
0.01 8e-1 34 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.01 8e-1 34 At4g31490 829276 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane;MOFP C.G. S.X.
0.01 8e-1 34 At4g31480 829275 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative F:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFP C.G. S.X.
0.02 8e-1 34 At3g24503 822042 ALDH2C4 Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 8e-8 57 Glycine max GmaAffx.11394.1.S1_at AI855673 - - 5e-8 At5g55570 unknown protein C.G. S.X.
0.04 6e+0 30 Hordeum vulgare HU08I01u_at HU08I01u - - 6e-1 At3g43150 unknown protein C.G. S.X.
0.12 7e-9 61 Oryza sativa Os01g0762300 CA763331 - Conserved hypothetical protein 6e-9 At5g55570 unknown protein C.G. S.X.
0.30 5e-9 61 Populus trichocarpa PtpAffx.216835.1.S1_s_at pmrna31873 hypothetical protein - 3e-9 At5g55570 unknown protein C.G. S.X.
0.05 9e-1 34 Triticum aestivum TaAffx.57255.1.S1_at CA633708 - - 1e+0 At5g55570 unknown protein C.G. S.X.
0.09 3e-7 54 Vitis vinifera 1610691_at CF211470 hypothetical protein LOC100250451 - 1e-6 At5g55570 unknown protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.912.1.A1_at AI770956 - - 5e-2 At4g01580 transcriptional factor B3 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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