Gene omics information

Query gene ID At5g55500
Gene name XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.S.X.H.G.
0.5570.6At3g03570821234-F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPOS.X.H.G.
0.4457.2At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPS.X.H.G.
0.4355.3At5g61840836306GUT1F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBFS.X.H.G.
0.4050.8At4g23640828464TRH1 (TINY ROOT HAIR 1)Functions as a potassium transporter and is required for the establishment of root tip growth.S.X.H.G.
0.2930.3At4g38640830020choline transporter-relatedF:unknown;P:unknown;C:unknown;MOFPABS.X.H.G.
0.135.8At4g38200829976guanine nucleotide exchange family proteinF:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
38.899.8GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
28.299.7GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
25.399.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
23.399.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
22.799.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.799.6GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.199.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
18.299.5GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
18.199.5GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
17.899.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-446At2g02070814738AtIDD5 (Arabidopsis thaliana Indeterminate(ID)-Domain 5)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOFPBAVC.G.S.X.
0.015e-240At5g64640836585pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:plasma membrane, plant-type cell wall;PBFOMC.G.S.X.
0.015e-240At4g13620826996AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.C.G.S.X.
0.015e-240At3g50230824185leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.025e-240At1g13020837859eukaryotic translation initiation factor, putative (EIF4B5)F:translation initiation factor activity;P:biological_process unknown;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.012e-138At5g13260831167unknown proteinF:unknown;P:biological_process unknown;C:unknown;MFOPBAVC.G.S.X.
0.012e-138At3g51290824292proline-rich family proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVAC.G.S.X.
0.012e-138At3g10180820180kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOBFPAVC.G.S.X.
0.022e-138At2g39320818517OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.101e-1275Glycine maxGma.2763.1.S1_atBE475241--4e-13At5g55500XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)C.G.S.X.
0.026e-342Hordeum vulgareContig18221_atContig18221Beta-1,2-xylosyltransferase-1e+1Atmg01200-C.G.S.X.
0.031e-140Oryza sativaOsAffx.13262.1.S1_at---0C.G.S.X.
0.186e-1893Populus trichocarpaPtp.261.1.S1_s_atCK093526hypothetical protein-5e-18At5g55500XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)C.G.S.X.
0.022e-138Triticum aestivumTaAffx.133323.1.S1_atBJ235784--3e-1At5g42655-C.G.S.X.
0.113e-22105Vitis vinifera1620579_atCB976610--5e-22At5g55500XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)C.G.S.X.
0.021e+034Zea maysZmAffx.843.1.A1_atAI770603--2e-1At1g69820GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0031204The process by which a protein translocates through the ER membrane posttranslationally.
XGO:0006487The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00510Link to KEGG PATHWAYN-Glycan biosynthesis
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