CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55290

Gene name ATP synthase subunit H family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At5g55290 835622 ATP synthase subunit H family protein F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF S.X. H.G.
0.48 62.5 At5g48810 834939 CB5-D (CYTOCHROME B5 ISOFORM D) Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation. S.X. H.G.
0.46 59.8 At4g02620 828221 vacuolar ATPase subunit F family protein F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:plasma membrane, vacuole;MFOPA S.X. H.G.
0.42 53.9 At2g03680 814896 SPR1 (SPIRAL1) The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle. S.X. H.G.
0.40 50.8 At1g01230 839331 ORMDL family protein F:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPO S.X. H.G.
0.40 50.8 At5g64400 836561 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOB S.X. H.G.
0.39 48.4 At3g08610 820008 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, respiratory chain complex I;P S.X. H.G.
0.38 46.7 At2g33470 817912 GLTP1 (glycolipid transfer protein 1) F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:plasma membrane;MFPO S.X. H.G.
0.37 45.0 At2g20930 816627 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP S.X. H.G.
0.36 43.6 At5g59880 836110 ADF3 (ACTIN DEPOLYMERIZING FACTOR 3) Encodes actin depolymerizing factor 3 (ADF3). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
36.5 99.7 GSM133781 Lindsey_1-6_globular-basal_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.0 99.5 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
14.6 99.4 GSM134513 Col-0_4day_dark_-lincomycin_rep1 GSE5759 red illumination w/o lincomycin
11.5 99.3 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
10.5 99.2 GSM173446 oxt6 mutant, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
9.9 99.1 GSM134519 Col-0_4day_red illumination_+lincomycin_rep1 GSE5759 red illumination w/o lincomycin
8.7 99.0 GSM134520 Col-0_4day_red illumination _+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
8.7 99.0 GSM134516 Col-0_4day_dark_+lincomycin_rep2 GSE5759 red illumination w/o lincomycin
8.0 98.9 GSM134518 Col-0_4day_red illumination_-lincomycin_rep2 GSE5759 red illumination w/o lincomycin
6.9 98.7 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.61 2e-37 155 At4g26710 828778 ATP synthase subunit H family protein F:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOF C.G. S.X.
0.02 2e-3 42 At1g73670 843702 ATMPK15 member of MAP Kinase C.G. S.X.
0.03 4e-1 34 At3g20800 821628 rcd1-like cell differentiation protein, putative F:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;MFOP C.G. S.X.
0.03 2e+0 32 At5g40660 834066 ATP12 protein-related F:protein binding;P:proton-transporting ATP synthase complex assembly;C:cellular_component unknown;BOMFP C.G. S.X.
0.02 2e+0 32 At5g18490 831967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMBO C.G. S.X.
0.02 2e+0 32 At4g10180 826609 DET1 (DE-ETIOLATED 1) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. C.G. S.X.
0.02 2e+0 32 At1g35540 840450 ARF14 (AUXIN RESPONSE FACTOR 14) F:transcription factor activity;P:regulation of transcription;C:nucleus;PB C.G. S.X.
0.01 2e+0 32 At1g27595 839651 - F:unknown;P:unknown;C:unknown;OMFPB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 2e-10 65 Glycine max GmaAffx.92523.1.S1_at CF808248 - - 7e-8 At4g26710 ATP synthase subunit H family protein C.G. S.X.
0.12 2e-4 44 Hordeum vulgare Contig6470_at Contig6470 - - 1e-3 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.25 2e-10 65 Oryza sativa Os04g0660600 AK120899.1 - ATP synthase subunit H family protein 3e-10 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.25 2e-19 95 Populus trichocarpa Ptp.6175.1.S1_a_at CV249693 hypothetical protein - 4e-19 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.14 2e-3 42 Triticum aestivum Ta.5109.3.S1_at CA697843 Plasma membrane H+-ATPase subunit H - 9e-6 At4g26710 ATP synthase subunit H family protein C.G. S.X.
0.30 4e-20 95 Vitis vinifera 1612654_at CA809225 hypothetical protein LOC100256926 - 3e-19 At5g55290 ATP synthase subunit H family protein C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.599.1.S1_at AI715027 - - 3e+0 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0015991 The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00190 Oxidative phosphorylation
01100 Metabolic pathways
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