Gene omics information

Query gene ID At5g55240
Gene name caleosin-related family protein / embryo-specific protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g55240835617caleosin-related family protein / embryo-specific protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.8290.9At5g45690834608unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.8089.8At1g29680839845unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.8089.8At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.7184.2At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVS.X.H.G.
0.7083.5At1g05510837053-Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.S.X.H.G.
0.6478.9At2g33520817917-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.6075.7At1g17810838359BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)beta-tonoplast intrinsic protein (beta-TIP) mRNA, completeS.X.H.G.
0.5570.6At2g23640816896reticulon family protein (RTNLB13)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
682.2100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
301.2100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
300.8100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
299.5100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
286.6100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
245.6100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
219.7100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
218.5100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
214.5100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.772e-95349At4g26740828781ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27.C.G.S.X.
0.019e-238At5g62310836352IRE (INCOMPLETE ROOT HAIR ELONGATION)Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs.C.G.S.X.
0.024e-136At2g45120819119zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFVBC.G.S.X.
0.021e+034At5g24890832558unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBC.G.S.X.
0.011e+034At3g47570823911leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
0.031e+034At2g38640818446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFC.G.S.X.
0.011e+034At2g44480819055BGLU17 (BETA GLUCOSIDASE 17)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAC.G.S.X.
0.031e+034At1g23530838962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.025e-136Glycine maxPsAffx.C178000005_atPsAffx.C178000005--4e-1At5g55240caleosin-related family protein / embryo-specific protein, putativeC.G.S.X.
0.057e-134Hordeum vulgareEBem09_SQ006_L23_atEBem09_SQ006_L23--4e-1At5g55240caleosin-related family protein / embryo-specific protein, putativeC.G.S.X.
0.063e+034Oryza sativaOs04g0511200X89891.1-EFA27 for EF hand, abscisic acid, 27kD2e+0At5g55240caleosin-related family protein / embryo-specific protein, putativeC.G.S.X.
0.229e-961Populus trichocarpaPtp.6973.1.S1_s_atCV257729hypothetical protein-1e-4At4g26740ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)C.G.S.X.
0.086e-342Triticum aestivumTa.9830.2.S1_atCA732327--4e-3At5g55240caleosin-related family protein / embryo-specific protein, putativeC.G.S.X.
0.077e-340Vitis vinifera1620307_atCB348708hypothetical protein LOC100264814-2e-10At2g33380RD20 (RESPONSIVE TO DESSICATION 20)C.G.S.X.
0.036e-134Zea maysZmAffx.163.1.A1_atAI668189pyrimidine-specific ribonucleoside hydrolase rihB-8e-1At5g55240caleosin-related family protein / embryo-specific protein, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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