CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55240

Gene name caleosin-related family protein / embryo-specific protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.82 90.9 At5g45690 834608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.80 89.8 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF S.X. H.G.
0.80 89.8 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.71 84.2 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV S.X. H.G.
0.70 83.5 At1g05510 837053 - Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. S.X. H.G.
0.64 78.9 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.60 75.7 At1g17810 838359 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete S.X. H.G.
0.55 70.6 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
682.2 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
301.2 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
300.8 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
299.5 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
286.6 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
245.6 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
219.7 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
218.5 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
214.5 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
196.2 100.0 E-ATMX-1-raw-cel-1112746267
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 2e-95 349 At4g26740 828781 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) Gene is expressed preferentially in the embryo, has similarity to a rice ABA-responsive gene, EFA27. C.G. S.X.
0.01 9e-2 38 At5g62310 836352 IRE (INCOMPLETE ROOT HAIR ELONGATION) Encodes a protein with a serine/threonine kinase domain. There are two other closely related members in Arabidopsis. Knock-out mutation results in incomplete root hair elongation. Expression is found all organs examined but is especially strong in elongating root hairs. C.G. S.X.
0.02 4e-1 36 At2g45120 819119 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MPOFVB C.G. S.X.
0.02 1e+0 34 At5g24890 832558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.01 1e+0 34 At3g47570 823911 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.03 1e+0 34 At2g38640 818446 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 1e+0 34 At2g44480 819055 BGLU17 (BETA GLUCOSIDASE 17) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA C.G. S.X.
0.03 1e+0 34 At1g23530 838962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Glycine max PsAffx.C178000005_at PsAffx.C178000005 - - 4e-1 At5g55240 caleosin-related family protein / embryo-specific protein, putative C.G. S.X.
0.05 7e-1 34 Hordeum vulgare EBem09_SQ006_L23_at EBem09_SQ006_L23 - - 4e-1 At5g55240 caleosin-related family protein / embryo-specific protein, putative C.G. S.X.
0.06 3e+0 34 Oryza sativa Os04g0511200 X89891.1 - EFA27 for EF hand, abscisic acid, 27kD 2e+0 At5g55240 caleosin-related family protein / embryo-specific protein, putative C.G. S.X.
0.22 9e-9 61 Populus trichocarpa Ptp.6973.1.S1_s_at CV257729 hypothetical protein - 1e-4 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.08 6e-3 42 Triticum aestivum Ta.9830.2.S1_at CA732327 - - 4e-3 At5g55240 caleosin-related family protein / embryo-specific protein, putative C.G. S.X.
0.07 7e-3 40 Vitis vinifera 1620307_at CB348708 hypothetical protein LOC100264814 - 2e-10 At2g33380 RD20 (RESPONSIVE TO DESSICATION 20) C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.163.1.A1_at AI668189 pyrimidine-specific ribonucleoside hydrolase rihB - 8e-1 At5g55240 caleosin-related family protein / embryo-specific protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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