CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55220

Gene name trigger factor type chaperone family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g55220 835615 trigger factor type chaperone family protein F:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFV S.X. H.G.
0.71 84.2 At1g55490 841996 CPN60B (CHAPERONIN 60 BETA) encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. S.X. H.G.
0.61 76.7 At4g29060 829027 emb2726 (embryo defective 2726) F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAV S.X. H.G.
0.46 59.8 At1g08540 837376 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light. S.X. H.G.
0.38 46.7 At2g24060 816940 translation initiation factor 3 (IF-3) family protein F:translation initiation factor activity;P:translational initiation;C:chloroplast;OBMPFVA S.X. H.G.
0.35 41.6 At3g62910 825466 APG3 (ALBINO AND PALE GREEN) Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. S.X. H.G.
0.28 30.3 At1g48520 841273 GATB (GLU-ADT SUBUNIT B) Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.4 99.4 GSM131471 ATGE_7_A2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
10.9 99.2 GSM131472 ATGE_7_B2 GSE5629 AtGenExpress: Developmental series (seedlings and whole plants)
9.9 99.1 E-MEXP-1100-raw-cel-1378752260
9.9 99.1 GSM131502 ATGE_10_B GSE5630 AtGenExpress: Developmental series (leaves)
9.8 99.1 GSM131501 ATGE_10_A GSE5630 AtGenExpress: Developmental series (leaves)
9.2 99.1 GSM265858 control shortB GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
8.7 99.0 GSM131503 ATGE_10_C GSE5630 AtGenExpress: Developmental series (leaves)
8.7 99.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
8.3 99.0 GSM265855 long 12A GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
8.3 99.0 GSM265867 long 12B GSE10522 Expression data of Arabidopsis thaliana rosettes during chilling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 8e-1 36 At3g58640 825033 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 8e-1 36 At3g23150 821891 ETR2 (ethylene response 2) Involved in ethylene perception in Arabidopsis C.G. S.X.
0.01 8e-1 36 At2g41451 6241352 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO C.G. S.X.
0.01 8e-1 36 At2g25370 817076 zinc finger protein-related F:zinc ion binding;P:unknown;C:unknown;MPOFB C.G. S.X.
0.01 8e-1 36 At2g43800 818984 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVA C.G. S.X.
0.01 3e+0 34 At5g41540 834156 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
0.01 3e+0 34 At5g57130 835819 protein binding F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM C.G. S.X.
0.01 3e+0 34 At5g45460 834582 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-9 65 Glycine max Gma.3438.1.S1_at CD399306 - - 1e-9 At5g55220 trigger factor type chaperone family protein C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig7069_at Contig7069 - - 2e-1 At5g03210 unknown protein C.G. S.X.
0.03 1e-4 50 Oryza sativa Os06g0308000 AK099680.1 - Trigger factor-like protein 6e-5 At5g55220 trigger factor type chaperone family protein C.G. S.X.
0.30 8e-11 69 Populus trichocarpa PtpAffx.212729.1.S1_at pmrna24899 hypothetical protein - 5e-11 At5g55220 trigger factor type chaperone family protein C.G. S.X.
0.02 9e-1 36 Triticum aestivum Ta.26079.1.S1_at CD452515 - - 3e+0 At2g44745 WRKY family transcription factor C.G. S.X.
0.09 1e-15 83 Vitis vinifera 1617061_s_at CD003896 hypothetical protein LOC100243475 - 2e-15 At5g55220 trigger factor type chaperone family protein C.G. S.X.
0.02 6e+0 32 Zea mays ZmAffx.610.1.A1_at AI715038 - - 1e+1 At5g07190 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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