Gene omics information

Query gene ID At5g55220
Gene name trigger factor type chaperone family protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g55220835615trigger factor type chaperone family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein transport;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMPFVS.X.H.G.
0.7184.2At1g55490841996CPN60B (CHAPERONIN 60 BETA)encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.S.X.H.G.
0.6176.7At4g29060829027emb2726 (embryo defective 2726)F:RNA binding, translation elongation factor activity;P:embryonic development ending in seed dormancy, translational elongation, response to cadmium ion;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVS.X.H.G.
0.4659.8At1g08540837376SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.S.X.H.G.
0.3846.7At2g24060816940translation initiation factor 3 (IF-3) family proteinF:translation initiation factor activity;P:translational initiation;C:chloroplast;OBMPFVAS.X.H.G.
0.3541.6At3g62910825466APG3 (ALBINO AND PALE GREEN)Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.S.X.H.G.
0.2830.3At1g48520841273GATB (GLU-ADT SUBUNIT B)Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.499.4GSM131471ATGE_7_A2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
10.999.2GSM131472ATGE_7_B2GSE5629AtGenExpress: Developmental series (seedlings and whole plants)
9.999.1GSM131502ATGE_10_BGSE5630AtGenExpress: Developmental series (leaves)
9.899.1GSM131501ATGE_10_AGSE5630AtGenExpress: Developmental series (leaves)
9.299.1GSM265858control shortBGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
8.799.0GSM131503ATGE_10_CGSE5630AtGenExpress: Developmental series (leaves)
8.799.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
8.399.0GSM265855long 12AGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
8.399.0GSM265867long 12BGSE10522Expression data of Arabidopsis thaliana rosettes during chilling
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-136At3g58640825033protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.018e-136At3g23150821891ETR2 (ethylene response 2)Involved in ethylene perception in ArabidopsisC.G.S.X.
0.018e-136At2g414516241352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOC.G.S.X.
0.018e-136At2g25370817076zinc finger protein-relatedF:zinc ion binding;P:unknown;C:unknown;MPOFBC.G.S.X.
0.018e-136At2g43800818984formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MPFOBVAC.G.S.X.
0.013e+034At5g41540834156disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAC.G.S.X.
0.013e+034At5g57130835819protein bindingF:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAMC.G.S.X.
0.013e+034At5g45460834582unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.111e-965Glycine maxGma.3438.1.S1_atCD399306--1e-9At5g55220trigger factor type chaperone family proteinC.G.S.X.
0.023e-240Hordeum vulgareContig7069_atContig7069--2e-1At5g03210unknown proteinC.G.S.X.
0.031e-450Oryza sativaOs06g0308000AK099680.1-Trigger factor-like protein6e-5At5g55220trigger factor type chaperone family proteinC.G.S.X.
0.308e-1169Populus trichocarpaPtpAffx.212729.1.S1_atpmrna24899hypothetical protein-5e-11At5g55220trigger factor type chaperone family proteinC.G.S.X.
0.029e-136Triticum aestivumTa.26079.1.S1_atCD452515--3e+0At2g44745WRKY family transcription factorC.G.S.X.
0.091e-1583Vitis vinifera1617061_s_atCD003896hypothetical protein LOC100243475-2e-15At5g55220trigger factor type chaperone family proteinC.G.S.X.
0.026e+032Zea maysZmAffx.610.1.A1_atAI715038--1e+1At5g07190ATS3 (ARABIDOPSIS THALIANA SEED GENE 3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006457The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
LGO:0015031The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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