CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55130

Gene name CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.20 14.4 At5g55130 835604 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) putative molybdopterin synthase sulphurylase (cnx5) S.X. H.G.
0.44 57.2 At5g18590 831977 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV S.X. H.G.
0.13 5.8 At1g12910 837849 ATAN11 (ANTHOCYANIN11) Encodes a protein with similarity to the petunia WD repeat protein an11. S.X. H.G.
0.11 4.1 At1g02840 839262 SR1 SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. S.X. H.G.
0.07 1.9 At5g17620 831628 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
185.3 100.0 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
138.4 99.9 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
129.6 99.9 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
64.0 99.8 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
59.6 99.8 GSM133771 Lindsey_1-23_torpedo-apical_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
57.4 99.8 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
53.3 99.8 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
37.8 99.8 GSM133769 Lindsey_1-21_torpedo-basal_Rep6_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.5 99.6 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
21.1 99.6 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-2 40 At4g29420 829063 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 4e-2 40 At3g48150 823970 APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) anaphase-promoting complex or cyclosome subunit C.G. S.X.
0.01 2e-1 38 At5g61980 836319 AGD1 (ARF-GAP domain 1) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons. C.G. S.X.
0.01 7e-1 36 At5g23050 832369 AAE17 (ACYL-ACTIVATING ENZYME 17) F:catalytic activity, ligase activity;P:metabolic process;C:cellular_component unknown;BOMFAP C.G. S.X.
0.01 7e-1 36 At5g12930 831133 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF C.G. S.X.
0.02 7e-1 36 At3g24508 3768919 - Encodes a defensin-like (DEFL) family protein. C.G. S.X.
0.01 7e-1 36 At3g13940 820607 DNA binding / DNA-directed RNA polymerase F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:nucleus;FMPOB C.G. S.X.
0.01 3e+0 34 At5g51430 835217 EYE (EMBRYO YELLOW) Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 3e-19 97 Glycine max Gma.773.1.S1_a_at CD397056 - - 2e-19 At5g55130 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare rbaal21e22_x_at rbaal21e22 - - 1e+0 At3g61898 unknown protein C.G. S.X.
0.07 2e-5 52 Oryza sativa Os02g0525400 AK065368.1 - Molybdenum cofactor synthesis protein 3(Molybdopterin synthase sulfurylase) (MPT synthasesulfurylase) 1e-5 At5g55130 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) C.G. S.X.
0.11 3e-4 48 Populus trichocarpa PtpAffx.81999.1.A1_at CV232658 hypothetical protein - 1e-4 At5g55130 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.56625.1.S1_at CA647545 - - 7e-1 At1g24310 unknown protein C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1607570_at CD799887 - - 5e-2 At1g49110 unknown protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.12655.1.A1_at AI737398 hypothetical protein LOC100277491 - 3e+0 At2g41445 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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