CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g55040

Gene name DNA binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.51 66.3 At5g55040 835595 DNA binding F:DNA binding;P:biological_process unknown;C:mitochondrion;MOFPBVA S.X. H.G.
0.34 39.8 At5g41330 834135 potassium channel tetramerisation domain-containing protein F:protein binding, voltage-gated potassium channel activity;P:potassium ion transport;C:voltage-gated potassium channel complex, membrane;MPO S.X. H.G.
0.34 39.8 At3g25210 822114 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFMBA S.X. H.G.
0.33 38.1 At4g10800 826676 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.32 35.7 At3g60850 825256 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.31 33.8 At5g42660 834275 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POBA S.X. H.G.
0.30 32.1 At3g19516 - - - S.X. H.G.
0.26 24.4 At2g22270 816760 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.26 24.4 At4g29000 829021 tesmin/TSO1-like CXC domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;OMPF S.X. H.G.
0.24 20.7 At5g52630 835340 MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) Encodes a member of the DYW subfamily of pentatricopeptide repeat (PPR) proteins. Loss of MEF1 function affects RNA editing at specific sites in the mitochondrial genome but do not exhibit obvious phenotypes. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
252.7 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
245.3 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
209.5 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
169.9 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
163.6 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
160.4 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.9 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.6 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
143.3 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
141.5 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-3 46 At1g20670 838655 DNA-binding bromodomain-containing protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.03 9e-2 40 At1g76380 843970 DNA-binding bromodomain-containing protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MFOPBV C.G. S.X.
0.01 3e-1 38 At4g13075 5008137 RALFL30 (RALF-LIKE 30) Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. C.G. S.X.
0.01 1e+0 36 At5g01440 831886 insulin-degrading enzyme-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOB C.G. S.X.
0.01 1e+0 36 At4g24200 828521 - F:unknown;P:unknown;C:mitochondrion;OBMFP C.G. S.X.
0.01 1e+0 36 At4g04920 825831 SFR6 (SENSITIVE TO FREEZING 6) Encodes a nuclear targeted protein that plays a role in the CBF pathway -downstream of CBF translation. Mutants have impaired cold responses, reduced levels of cold induced RNA transcripts, are sensitive to osmotic stress. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 38 Glycine max PsAffx.psHB001xG08f_at PsAffx.psHB001xG08f - - 4e+0 At3g52800 zinc finger (AN1-like) family protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare Contig4674_at Contig4674 - - 5e-2 At1g51680 4CL1 (4-COUMARATE:COA LIGASE 1) C.G. S.X.
0.03 1e-8 63 Oryza sativa Os09g0550000 AK067716.1 - Bromodomain containing protein 6e-18 At1g20670 DNA-binding bromodomain-containing protein C.G. S.X.
0.07 9e-9 63 Populus trichocarpa PtpAffx.120111.1.S1_s_at CX185810 bromodomain protein - 2e-33 At1g20670 DNA-binding bromodomain-containing protein C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.18973.1.S1_at BJ309689 - - 1e+0 At5g52200 unknown protein C.G. S.X.
0.03 1e-10 67 Vitis vinifera 1616772_at CD799675 hypothetical protein LOC100244510 - 1e-6 At1g20670 DNA-binding bromodomain-containing protein C.G. S.X.
0.01 1e-1 38 Zea mays Zm.7294.1.S1_at BQ293982 hypothetical protein LOC100273088 - 4e-8 At5g04430 BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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