CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54910

Gene name DEAD/DEAH box helicase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g54910 835582 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAV S.X. H.G.
0.48 62.5 At2g21440 816683 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MOFPBAV S.X. H.G.
0.36 43.6 At4g25730 828678 FtsJ-like methyltransferase family protein F:methyltransferase activity;P:rRNA processing, rRNA methylation;C:nucleus;OMBFPVA S.X. H.G.
0.35 41.6 At3g12340 820412 FK506 binding / peptidyl-prolyl cis-trans isomerase F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid lumen;MOBFPAV S.X. H.G.
0.35 41.6 At3g24080 821994 KRR1 family protein F:molecular_function unknown;P:response to salt stress;C:cytosol;MOFBPVA S.X. H.G.
0.33 38.1 At1g71850 843515 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;POFMVB S.X. H.G.
0.29 30.3 At1g11240 837665 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.29 30.3 At5g09840 830844 unknown protein F:unknown;P:unknown;C:mitochondrion;PMFOB S.X. H.G.
0.25 22.6 At5g22320 832292 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
203.6 100.0 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
69.4 99.9 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
68.9 99.9 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
49.3 99.8 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
47.4 99.8 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
38.5 99.8 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
29.6 99.7 GSM133975 Birnbaum_1-5_StageI-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
27.3 99.7 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
26.1 99.7 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
22.9 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-7 57 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV C.G. S.X.
0.01 2e-2 42 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase C.G. S.X.
0.01 7e-2 40 At5g66900 836824 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAV C.G. S.X.
0.01 3e-1 38 At2g25440 817082 AtRLP20 (Receptor Like Protein 20) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV C.G. S.X.
0.01 3e-1 38 At1g01060 839341 LHY (LATE ELONGATED HYPOCOTYL) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 C.G. S.X.
0.01 1e+0 36 Atcg01130 - - hypothetical protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 36 Glycine max Gma.10282.1.A1_at AW568775 - - 6e-2 At4g30845 unknown protein C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig14943_at Contig14943 - - 6e-1 At2g04025 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.4457.1.S1_at - - - 0 C.G. S.X.
0.21 3e-20 101 Populus trichocarpa PtpAffx.211225.1.S1_at pmrna22048 hypothetical protein - 2e-20 At5g54910 DEAD/DEAH box helicase, putative C.G. S.X.
0.02 3e-1 38 Triticum aestivum TaAffx.86852.1.S1_at CA599753 - - 4e-3 At3g09720 DEAD/DEAH box helicase, putative C.G. S.X.
0.12 1e-6 54 Vitis vinifera 1619900_at CA814624 hypothetical protein LOC100246858 - 1e-6 At5g54910 DEAD/DEAH box helicase, putative C.G. S.X.
0.02 5e-1 36 Zea mays ZmAffx.1402.1.S1_at 40794996-77 - - 3e+0 At3g59680 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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