CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54860

Gene name integral membrane transporter family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g54860 835577 integral membrane transporter family protein F:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAF S.X. H.G.
0.86 93.1 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.80 89.8 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF S.X. H.G.
0.46 59.8 At4g05020 825844 NDB2 (NAD(P)H dehydrogenase B2) F:disulfide oxidoreductase activity, oxidoreductase activity, FAD binding;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion;BOFPAM S.X. H.G.
0.25 22.6 At1g30620 839942 MUR4 (MURUS 4) encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.9 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
52.3 99.8 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
47.5 99.8 E-MEXP-1443-raw-cel-1581869745
44.0 99.8 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
42.0 99.8 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
40.5 99.8 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
36.4 99.7 E-MEXP-1443-raw-cel-1581869803
34.4 99.7 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
30.3 99.7 GSM184908 Arabidopsis, root cells, epidermis and lateral root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
30.3 99.7 E-MEXP-1443-raw-cel-1581869863
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At3g22910 821863 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) F:calmodulin binding, calcium-transporting ATPase activity;P:cation transport, calcium ion transport, metabolic process, ATP biosynthetic process;C:membrane;BMOFPAV C.G. S.X.
0.01 7e-1 36 At3g48730 824034 GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2) F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPV C.G. S.X.
0.01 7e-1 36 At1g76240 843957 unknown protein F:molecular_function unknown;P:unknown;C:chloroplast;PMO C.G. S.X.
0.01 3e+0 34 At5g64320 836553 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMBA C.G. S.X.
0.01 3e+0 34 At5g60690 836190 REV (REVOLUTA) REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA. C.G. S.X.
0.01 3e+0 34 At5g53660 835447 AtGRF7 (GROWTH-REGULATING FACTOR 7) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. C.G. S.X.
0.02 3e+0 34 At4g14520 827099 DNA-directed RNA polymerase II-related Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit, NRPB7 (At5g59180) C.G. S.X.
0.01 3e+0 34 At4g08920 826470 CRY1 (CRYPTOCHROME 1) Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max PsAffx.psMC009xJ19f_at PsAffx.psMC009xJ19f - - 2e+0 At5g62627 - C.G. S.X.
0.03 9e-2 38 Hordeum vulgare Contig18763_at Contig18763 - - 1e-1 At5g54860 integral membrane transporter family protein C.G. S.X.
0.07 4e-4 48 Oryza sativa Os01g0243200 AK103210.1 - Biopterin transport-related protein BT1 familyprotein 4e-4 At5g54860 integral membrane transporter family protein C.G. S.X.
0.29 2e-20 101 Populus trichocarpa PtpAffx.210056.1.S1_s_at pmrna19812 hypothetical protein - 1e-20 At5g54860 integral membrane transporter family protein C.G. S.X.
0.03 2e-1 38 Triticum aestivum Ta.14297.1.A1_at BJ274227 - - 7e-2 At5g54860 integral membrane transporter family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1622016_at CF214587 - - 4e+0 At4g04423 endo-1,3(4)-beta-glucanase C.G. S.X.
0.01 5e+0 32 Zea mays Zm.69.1.A1_at CF019994 - - 4e-4 At1g54580 ACP2 (ACYL CARRIER PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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