Gene omics information

Query gene ID At5g54720
Gene name ankyrin repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2115.8At5g54720835561ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBFS.X.H.G.
0.7788.0At1g61490842443S-locus protein kinase, putativeF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAS.X.H.G.
0.7385.5At3g28890822523AtRLP43 (Receptor Like Protein 43)F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAVS.X.H.G.
0.7385.5At3g486503769688-F:unknown;P:unknown;C:unknownS.X.H.G.
0.6176.7At3g44350823560anac061 (Arabidopsis NAC domain containing protein 61)F:transcription factor activity;P:multicellular organismal development, response to chitin, regulation of transcription;C:cellular_component unknown;PS.X.H.G.
0.6176.7At5g24540832525BGLU31 (BETA GLUCOSIDASE 31)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFAS.X.H.G.
0.6075.7At4g11470826752protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.5368.6At5g46295834672unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
289.1100.0E-MEXP-807-raw-cel-1173273144
265.9100.0E-MEXP-807-raw-cel-1173273252
218.4100.0GSM131148AtGen_B-34_3-6-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
163.999.9GSM131134AtGen_B-20_2-6-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
137.899.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
116.799.9GSM131146AtGen_B-32_3-4-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
116.299.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
113.599.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
106.899.9GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.199.9GSM131119AtGen_B-5_1-5-1_REP_1_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.234e-74278At5g54710835560ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;MOPBFVAC.G.S.X.
0.023e-136At1g34050840302ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVAC.G.S.X.
0.011e+034At5g35930833582AMP-dependent synthetase and ligase family proteinF:phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding;P:metabolic process;C:cellular_component unknown;BOFMPAC.G.S.X.
0.014e+032At5g64300836551ATGCHencodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectivelyC.G.S.X.
0.024e+032At5g28520832945-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.034e+032At5g17110831574-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.014e+032At4g26140828720BGAL12 (beta-galactosidase 12)putative beta-galactosidaseC.G.S.X.
0.014e+032At4g37460829901SRFR1 (SUPPRESSOR OF RPS4-RLD 1)Encodes a tetratricopeptide repeat domain containing protein that shows sequence similarity to those of transcriptional repressors in other organisms.Involved in mediating effector-triggered immunity.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-138Glycine maxGmaAffx.84199.1.S1_atAW201276--3e-22At5g51970sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putativeC.G.S.X.
0.028e+030Hordeum vulgarerbaal12b04_atrbaal12b04--5e+0At5g46990invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.038e+032Oryza sativaOs11g05291339639.m02959--6e+0At2g15050LTPC.G.S.X.
0.036e+032Populus trichocarpaPtpAffx.217661.1.S1_s_atpmrna33015hypothetical protein-1e+0At5g01015unknown proteinC.G.S.X.
0.042e+130Triticum aestivumTa.7669.2.S1_atBG904886--3e-3At5g48970mitochondrial substrate carrier family proteinC.G.S.X.
0.035e+030Vitis vinifera1617348_atCF413614hypothetical protein LOC100249807-4e-2At3g12340FK506 binding / peptidyl-prolyl cis-trans isomeraseC.G.S.X.
0.027e+030Zea maysZm.9046.1.A1_atCK371685ATP synthase delta chain-2e+0At1g26600CLE9 (CLAVATA3/ESR-RELATED 9)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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