CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54720

Gene name ankyrin repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At5g54720 835561 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF S.X. H.G.
0.77 88.0 At1g61490 842443 S-locus protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA S.X. H.G.
0.73 85.5 At3g28890 822523 AtRLP43 (Receptor Like Protein 43) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV S.X. H.G.
0.73 85.5 At3g48650 3769688 - F:unknown;P:unknown;C:unknown S.X. H.G.
0.61 76.7 At3g44350 823560 anac061 (Arabidopsis NAC domain containing protein 61) F:transcription factor activity;P:multicellular organismal development, response to chitin, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At5g24540 832525 BGLU31 (BETA GLUCOSIDASE 31) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:response to other organism;C:endomembrane system;BOPMFA S.X. H.G.
0.60 75.7 At4g11470 826752 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.53 68.6 At5g46295 834672 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
289.1 100.0 E-MEXP-807-raw-cel-1173273144
265.9 100.0 E-MEXP-807-raw-cel-1173273252
218.4 100.0 GSM131148 AtGen_B-34_3-6-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
163.9 99.9 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
137.8 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
116.7 99.9 GSM131146 AtGen_B-32_3-4-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
116.2 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
113.5 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
106.8 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.1 99.9 GSM131119 AtGen_B-5_1-5-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 4e-74 278 At5g54710 835560 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:endomembrane system;MOPBFVA C.G. S.X.
0.02 3e-1 36 At1g34050 840302 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVA C.G. S.X.
0.01 1e+0 34 At5g35930 833582 AMP-dependent synthetase and ligase family protein F:phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding;P:metabolic process;C:cellular_component unknown;BOFMPA C.G. S.X.
0.01 4e+0 32 At5g64300 836551 ATGCH encodes GTP cyclohydrolase II that can functionally complement E. coli mutant deficient in this gene. It also has 3,4-dihydroxy-2-butanone-4-phosphate synthase activity which makes it a bifunctional enzyme involved in the formation of the pyrimidine and of the carbohydrate from GTP and ribulose-5-phosphate, respectively C.G. S.X.
0.02 4e+0 32 At5g28520 832945 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 4e+0 32 At5g17110 831574 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 4e+0 32 At4g26140 828720 BGAL12 (beta-galactosidase 12) putative beta-galactosidase C.G. S.X.
0.01 4e+0 32 At4g37460 829901 SRFR1 (SUPPRESSOR OF RPS4-RLD 1) Encodes a tetratricopeptide repeat domain containing protein that shows sequence similarity to those of transcriptional repressors in other organisms.Involved in mediating effector-triggered immunity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Glycine max GmaAffx.84199.1.S1_at AW201276 - - 3e-22 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative C.G. S.X.
0.02 8e+0 30 Hordeum vulgare rbaal12b04_at rbaal12b04 - - 5e+0 At5g46990 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 8e+0 32 Oryza sativa Os11g0529133 9639.m02959 - - 6e+0 At2g15050 LTP C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.217661.1.S1_s_at pmrna33015 hypothetical protein - 1e+0 At5g01015 unknown protein C.G. S.X.
0.04 2e+1 30 Triticum aestivum Ta.7669.2.S1_at BG904886 - - 3e-3 At5g48970 mitochondrial substrate carrier family protein C.G. S.X.
0.03 5e+0 30 Vitis vinifera 1617348_at CF413614 hypothetical protein LOC100249807 - 4e-2 At3g12340 FK506 binding / peptidyl-prolyl cis-trans isomerase C.G. S.X.
0.02 7e+0 30 Zea mays Zm.9046.1.A1_at CK371685 ATP synthase delta chain - 2e+0 At1g26600 CLE9 (CLAVATA3/ESR-RELATED 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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