CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54690

Gene name GAUT12 (GALACTURONOSYLTRANSFERASE 12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g54690 835558 GAUT12 (GALACTURONOSYLTRANSFERASE 12) Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%). S.X. H.G.
0.95 97.0 At2g38080 818386 IRX12 (IRREGULAR XYLEM 12) Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. S.X. H.G.
0.95 97.0 At5g15630 831417 IRX6 Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars. S.X. H.G.
0.95 97.0 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. S.X. H.G.
0.95 97.0 At5g67210 836856 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.92 96.0 At3g16920 820947 chitinase F:chitinase activity;P:cell wall macromolecule catabolic process;C:unknown;PBMOF S.X. H.G.
0.92 96.0 At3g18660 821397 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) Plants expressing an RNAi construct specifically targeting PGSIP1 was shown to have a dramatically reduced amount of starch. S.X. H.G.
0.91 95.6 At4g28500 828968 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;PO S.X. H.G.
0.90 95.1 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.90 95.1 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
321.1 100.0 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
243.1 100.0 E-MEXP-265-raw-cel-414618291
230.4 100.0 E-MEXP-265-raw-cel-414618491
225.6 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
215.3 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
200.2 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
200.0 100.0 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
193.4 100.0 E-MEXP-265-raw-cel-414618394
186.2 100.0 E-MEXP-265-raw-cel-414618796
177.2 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 8e-4 46 At4g38270 829984 GAUT3 (Galacturonosyltransferase 3) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.09 8e-4 46 At3g01040 821312 GAUT13 (Galacturonosyltransferase 13) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.03 3e-3 44 At3g61130 825285 GAUT1 (GALACTURONOSYLTRANSFERASE 1) Encodes a protein with putative galacturonosyltransferase activity. C.G. S.X.
0.01 5e-2 40 At5g17270 831592 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFP C.G. S.X.
0.01 2e-1 38 At4g02800 828171 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA C.G. S.X.
0.02 2e-1 38 At3g23930 821976 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 8e-1 36 At5g42540 834261 XRN2 (EXORIBONUCLEASE 2) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN2 acts as a suppressor of posttranscriptional gene silencing. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 2e-30 135 Glycine max GmaAffx.55959.1.S1_at BQ629429 - - 5e-31 At5g54690 GAUT12 (GALACTURONOSYLTRANSFERASE 12) C.G. S.X.
0.05 6e-3 42 Hordeum vulgare Contig11018_at Contig11018 - - 1e-48 At3g25140 QUA1 (QUASIMODO 1) C.G. S.X.
0.05 4e-4 48 Oryza sativa Os03g0211800 9631.m01048 - Glycosyl transferase, family 8 protein 9e-20 At5g15470 GAUT14 (Galacturonosyltransferase 14) C.G. S.X.
0.18 4e-25 117 Populus trichocarpa PtpAffx.87172.1.S1_at CK318880 glycosyltransferase, CAZy family GT8 - 1e-25 At5g54690 GAUT12 (GALACTURONOSYLTRANSFERASE 12) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.110881.1.S1_at CA652387 - - 2e+0 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1613608_at CB916843 - - 2e-8 At2g42000 plant EC metallothionein-like family 15 protein C.G. S.X.
0.04 6e-3 42 Zea mays Zm.15933.1.A1_at CA400453 - - 2e-22 At3g61130 GAUT1 (GALACTURONOSYLTRANSFERASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010413 The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units.
X GO:0010417 The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues.
X GO:0007047 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
S GO:0045492 The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone.
C GO:0016051 The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase
00437 Xyloglucan biosynthesis and modification

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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