CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54510

Gene name DFL1 (DWARF IN LIGHT 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g54510 835539 DFL1 (DWARF IN LIGHT 1) Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3). S.X. H.G.
0.25 22.6 At4g27260 828834 WES1 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. S.X. H.G.
0.18 11.4 At5g59010 836018 protein kinase-related F:protein tyrosine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;PMBOFVA S.X. H.G.
0.15 7.8 At2g42300 818831 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF S.X. H.G.
0.06 1.4 At3g50530 824217 CRK (CDPK-related kinase) CDPK-related kinase S.X. H.G.
0.00 0.0 At2g47900 819402 AtTLP3 (TUBBY LIKE PROTEIN 3) Member of TLP family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.1 99.9 GSM133721 Deeken_A-1-Deeke-Tum_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
67.8 99.9 E-MEXP-715-raw-cel-1121836221
66.7 99.8 GSM75510 Col-0 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
63.2 99.8 E-MEXP-715-raw-cel-1121836087
60.3 99.8 GSM75514 Col-0 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
58.9 99.8 E-MEXP-1474-raw-cel-1593932897
55.9 99.8 E-MEXP-715-raw-cel-1121836361
52.8 99.8 E-MEXP-715-raw-cel-1121836113
51.8 99.8 E-MEXP-1474-raw-cel-1593932609
51.3 99.8 E-MEXP-1474-raw-cel-1593932705
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 0 1388 At4g27260 828834 WES1 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. C.G. S.X.
0.04 6e-8 59 At4g37390 829893 BRU6 Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity. C.G. S.X.
0.12 6e-8 59 At2g14960 815985 GH3.1 encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin. C.G. S.X.
0.12 6e-5 50 At2g23170 816849 GH3.3 encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. C.G. S.X.
0.02 2e-4 48 At1g23160 838924 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:unknown;OPBMF C.G. S.X.
0.04 1e-2 42 At5g13350 831176 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF C.G. S.X.
0.02 1e-2 42 At1g72230 843555 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POB C.G. S.X.
0.01 2e-1 38 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF C.G. S.X.
0.01 2e-1 38 At4g34980 829650 SLP2 Serine protease similar to subtilisin. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 6e-9 63 Glycine max GmaAffx.2559.1.S1_at AW164615 - - 9e-10 At4g27260 WES1 C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig25902_at Contig25902 - - 2e-1 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) C.G. S.X.
0.08 5e-1 38 Oryza sativa Os01g0785400 AK063368.1 - GH3 auxin-responsive promoter family protein 7e-2 At4g27260 WES1 C.G. S.X.
0.57 1e-40 169 Populus trichocarpa PtpAffx.210014.1.S1_at pmrna19744 GH3 family protein - 9e-41 At5g54510 DFL1 (DWARF IN LIGHT 1) C.G. S.X.
0.04 1e-2 42 Triticum aestivum Ta.4458.1.A1_at CK200357 - - 2e-1 At4g27260 WES1 C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1614782_at CB970893 hypothetical protein LOC100242015 - 2e-1 At4g18070 unknown protein C.G. S.X.
0.02 4e-1 36 Zea mays Zm.13354.1.S1_s_at AW067009 indole-3-acetic acid-amido synthetase GH3.8 - 4e-12 At2g14960 GH3.1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0009734 The series of molecular signals generated in response to detection of auxin.
X GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
S GO:0010252 Maintenance of endogenous concentration of primary auxin equilibrium, or constant level of auxin in a biological system by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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