Gene omics information

Query gene ID At5g54330
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9296.0At5g54330835521unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7888.6At5g54480835536unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVAS.X.H.G.
0.7486.1At2g062203768629transposable element genepseudogene of unknown proteinS.X.H.G.
0.7486.1At3g55930824759RNA splicing factor-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBS.X.H.G.
0.7184.2At3g30845822868unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6982.9At1g364403767000transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6982.9At4g03570825657-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6982.9At2g06120815168transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.6982.9At2g29610817511-pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domainS.X.H.G.
0.6882.2At2g076203767903transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
817.8100.0GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
539.7100.0GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
444.0100.0GSM205430met1-3_leaf_fourth-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
300.9100.0GSM205428met1-3_leaf_fourth-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
206.6100.0GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
203.0100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
197.0100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
181.8100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
179.5100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
177.0100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.411e-177623At5g55870835682unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.621e-155549At5g55890835685unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.621e-155549At5g55880835684unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.536e-127454At5g55270835620unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.531e-112406At5g54320835520unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.472e-102373At5g54550835543unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.451e-84313At5g52940835371unknown proteinF:unknown;P:unknown;C:mitochondrion;PC.G.S.X.
0.425e-75282At5g52930835370unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.385e-69262At5g54560835544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e+034Glycine maxGmaAffx.36008.1.S1_atBF425243--1e+0At2g30740serine/threonine protein kinase, putativeC.G.S.X.
0.021e+034Hordeum vulgareHS06P07u_atHS06P07u--2e-1At5g13070MSF1-like family proteinC.G.S.X.
0.024e+034Oryza sativaOs01g0365066NM_194034.1--1e+0At5g62290nucleotide-sensitive chloride conductance regulator (ICln) family proteinC.G.S.X.
0.023e+034Populus trichocarpaPtpAffx.58160.1.A1_atCV253802--6e+0At4g32280IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)C.G.S.X.
0.031e-138Triticum aestivumTa.18356.1.S1_atCA635027--3e+0At1g48000MYB112 (myb domain protein 112)C.G.S.X.
0.026e-134Vitis vinifera1621816_atCF514840hypothetical protein LOC100257715-1e+0At5g55870unknown proteinC.G.S.X.
0.029e-134Zea maysZmAffx.659.1.A1_atAI715087--3e+0At1g74430MYB95 (myb domain protein 95)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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