CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54330

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At5g54330 835521 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.78 88.6 At5g54480 835536 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;BMOPFVA S.X. H.G.
0.74 86.1 At2g06220 3768629 transposable element gene pseudogene of unknown protein S.X. H.G.
0.74 86.1 At3g55930 824759 RNA splicing factor-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB S.X. H.G.
0.71 84.2 At3g30845 822868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At1g36440 3767000 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.69 82.9 At4g03570 825657 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At2g06120 815168 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.69 82.9 At2g29610 817511 - pseudogene of the F-box protein family, contains Pfam profile PF00646: F-box domain S.X. H.G.
0.68 82.2 At2g07620 3767903 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
817.8 100.0 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
539.7 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
444.0 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
300.9 100.0 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
206.6 100.0 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
203.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
197.0 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
181.8 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
179.5 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
177.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.41 1e-177 623 At5g55870 835682 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.62 1e-155 549 At5g55890 835685 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.62 1e-155 549 At5g55880 835684 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.53 6e-127 454 At5g55270 835620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.53 1e-112 406 At5g54320 835520 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.47 2e-102 373 At5g54550 835543 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P C.G. S.X.
0.45 1e-84 313 At5g52940 835371 unknown protein F:unknown;P:unknown;C:mitochondrion;P C.G. S.X.
0.42 5e-75 282 At5g52930 835370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.38 5e-69 262 At5g54560 835544 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max GmaAffx.36008.1.S1_at BF425243 - - 1e+0 At2g30740 serine/threonine protein kinase, putative C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HS06P07u_at HS06P07u - - 2e-1 At5g13070 MSF1-like family protein C.G. S.X.
0.02 4e+0 34 Oryza sativa Os01g0365066 NM_194034.1 - - 1e+0 At5g62290 nucleotide-sensitive chloride conductance regulator (ICln) family protein C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.58160.1.A1_at CV253802 - - 6e+0 At4g32280 IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29) C.G. S.X.
0.03 1e-1 38 Triticum aestivum Ta.18356.1.S1_at CA635027 - - 3e+0 At1g48000 MYB112 (myb domain protein 112) C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1621816_at CF514840 hypothetical protein LOC100257715 - 1e+0 At5g55870 unknown protein C.G. S.X.
0.02 9e-1 34 Zea mays ZmAffx.659.1.A1_at AI715087 - - 3e+0 At1g74430 MYB95 (myb domain protein 95) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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