CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54300

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.23 19.3 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA S.X. H.G.
0.80 89.8 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM S.X. H.G.
0.61 76.7 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) S.X. H.G.
0.57 73.8 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. S.X. H.G.
0.33 38.1 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA S.X. H.G.
0.33 38.1 At4g39500 830104 CYP96A11 member of CYP96A S.X. H.G.
0.20 14.4 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
318.5 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
191.0 100.0 E-MEXP-1443-raw-cel-1581869863
181.3 100.0 E-MEXP-1443-raw-cel-1581869921
175.2 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
145.5 99.9 GSM134307 Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
134.6 99.9 GSM134305 Penfield_1-7_endosperm-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
133.8 99.9 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
125.8 99.9 E-MEXP-849-raw-cel-1181980982
116.2 99.9 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
90.9 99.9 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 9e-15 81 At1g61260 842420 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.03 3e-5 50 At1g11230 837664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.05 8e-3 42 At1g11220 837663 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 1e-1 38 At5g11610 831033 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF C.G. S.X.
0.03 5e-1 36 Atcg00330 - - 30S chloroplast ribosomal protein S14 C.G. S.X.
0.03 5e-1 36 At5g45860 834626 Bet v I allergen family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PBM C.G. S.X.
0.02 5e-1 36 At5g24460 832517 unknown protein F:unknown;P:biological_process unknown;C:cell wall;PFO C.G. S.X.
0.01 5e-1 36 At5g65710 836700 HSL2 (HAESA-Like 2) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 7e-4 46 Glycine max GmaAffx.40140.1.S1_at AW306442 - - 2e-4 At5g54300 unknown protein C.G. S.X.
0.05 9e-1 34 Hordeum vulgare Contig26505_at Contig26505 - - 1e+0 At5g54300 unknown protein C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.7607.1.S1_at - - - 0 C.G. S.X.
0.10 3e-9 63 Populus trichocarpa PtpAffx.113969.1.A1_at CV276766 - - 2e-9 At5g54300 unknown protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.1687.1.S1_at BE443801 - - 9e-1 At4g02075 PIT1 (pitchoun 1) C.G. S.X.
0.07 2e-7 56 Vitis vinifera 1621093_at CB343061 hypothetical protein LOC100267532 - 2e-16 At1g61260 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.1096.1.A1_at AW090847 - - 2e-1 At3g02570 MEE31 (MATERNAL EFFECT EMBRYO ARREST 31) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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