CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54250

Gene name ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. S.X. H.G.
0.62 77.3 At1g07440 837256 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.57 73.8 At2g45740 819182 PEX11D member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. S.X. H.G.
0.56 73.0 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO S.X. H.G.
0.56 73.0 At1g02475 839236 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP S.X. H.G.
0.53 68.6 At4g28740 828995 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.52 67.4 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF S.X. H.G.
0.51 66.3 At3g28080 822432 nodulin MtN21 family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAM S.X. H.G.
0.51 66.3 At2g03550 814884 hydrolase F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV S.X. H.G.
0.48 62.5 At3g51420 824305 SSL4 (STRICTOSIDINE SYNTHASE-LIKE 4) F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.8 99.7 GSM260878 A1-Greco-Bou GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
24.9 99.6 GSM260879 A2-Greco-WT GSE10322 Higher order transcriptional regulation conferred by the bountiful gain of function mutant
19.5 99.6 GSM133826 Walters_A-05-Kruger-WH2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
18.1 99.5 GSM133827 Walters_A-06-Kruger-WH3_REP3 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
16.8 99.5 GSM133823 Walters_A-02-Kruger-WL2_REP2 GSE5737 Carbohydrate- and redox-regulation of gene expression in a TPT mutant
15.5 99.5 E-MEXP-550-raw-cel-871342472
14.9 99.4 GSM142819 SS002_ATH1_A11-smith-24h_repeat GSE6174 Gene expression and carbohydrate metabolism through the diurnal cycle
14.1 99.4 E-MEXP-550-raw-cel-871342463
14.0 99.4 GSM134370 St.Clair_1-31_343_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
13.4 99.4 E-ATMX-32-raw-cel-1562974409
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 1e-3 46 At5g15410 831393 DND1 (DEFENSE NO DEATH 1) 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens. C.G. S.X.
0.01 7e-2 40 At2g11570 815630 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF C.G. S.X.
0.01 3e-1 38 At4g23940 828494 FtsH protease, putative F:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAV C.G. S.X.
0.01 3e-1 38 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
0.01 3e-1 38 At1g04970 839357 lipid-binding serum glycoprotein family protein F:lipid binding;P:biological_process unknown;C:plasma membrane, vacuole;MPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-23 111 Glycine max GmaAffx.84317.1.S1_at AI748348 - - 4e-24 At5g54250 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) C.G. S.X.
0.02 1e-1 38 Hordeum vulgare Contig26333_at Contig26333 - - 4e+0 At2g15830 unknown protein C.G. S.X.
0.12 9e-9 63 Oryza sativa Os01g0782700 NM_191507.1 - Cyclic nucleotide-binding domain containingprotein 4e-9 At5g54250 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) C.G. S.X.
0.24 8e-27 123 Populus trichocarpa Ptp.2952.1.S1_at BU892496 - - 2e-27 At5g54250 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) C.G. S.X.
0.02 1e+0 36 Triticum aestivum Ta.15637.1.S1_at CA502690 - - 3e+0 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.13 7e-24 111 Vitis vinifera 1621591_at CB981532 hypothetical LOC100265816 - 1e-23 At5g54250 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) C.G. S.X.
0.06 7e-3 42 Zea mays Zm.12003.1.S1_at CF630358 hypothetical protein LOC100273558 - 6e-3 At5g54250 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009626 The rapid, localized death of plant cells in response to invasion by a pathogen.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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