Gene omics information

Query gene ID At5g54190
Gene name PORA
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AS.X.H.G.
0.5570.6At2g46990819313IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.S.X.H.G.
0.5065.3At4g10240826615zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POMS.X.H.G.
0.4457.2At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMS.X.H.G.
0.4355.3At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POS.X.H.G.
0.4050.8At5g53660835447AtGRF7 (GROWTH-REGULATING FACTOR 7)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
240.1100.0GSM226270phyAphyB_Dark_replicate1GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
153.399.9GSM226271phyAphyB_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
149.399.9GSM226267WT(Ler)_Dark_replicate1GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
149.199.9GSM226269WT(Ler)_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
148.699.9GSM226272phyAphyB_Dark_replicate3GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
144.799.9E-MEXP-1304-raw-cel-1530618104
139.999.9GSM226268WT(Ler)_Dark_replicate2GSE8951A light-independent allele of phytochrome B faithfully recapitulates photomorphogenic transcriptional networks
136.599.9E-MEXP-1304-raw-cel-1530618033
135.099.9E-NASC-78-raw-cel-1463195219
132.999.9E-NASC-78-raw-cel-1463195267
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.760702At4g27440828853PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)light-dependent NADPH:protochlorophyllide oxidoreductase BC.G.S.X.
0.406e-32139At1g03630839009POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.C.G.S.X.
0.022e-138At3g44080823526F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.012e-138At2g43980819003AtITPK4 (inositol 1,3,4-trisphosphate 5/6-kinase 4)F:magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity;P:inositol trisphosphate metabolic process;C:intracellular;PMOC.G.S.X.
0.016e-136At5g18070831926DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).C.G.S.X.
0.016e-136At5g67240836859SDN3 (SMALL RNA DEGRADING NUCLEASE 3)F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFOPBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.393e-59230Glycine maxGma.10890.1.S1_atBE209713--2e-81At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)C.G.S.X.
0.251e-963Hordeum vulgareContig2764_s_atContig2764--3e-9At5g54190PORAC.G.S.X.
0.101e-346Oryza sativaOs04g0678700AK065236.1-Protochlorophyllide reductase A, chloroplastprecursor (EC 1.3.1.33) (PCR A)(NADPH-protochlorophyllide oxidoreductase A) (POR A)8e-4At5g54190PORAC.G.S.X.
0.468e-75282Populus trichocarpaPtpAffx.102038.1.A1_atCV240356hypothetical protein-4e-75At5g54190PORAC.G.S.X.
0.162e-448Triticum aestivumTa.24730.3.S1_atCK211162--5e-3At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)C.G.S.X.
0.423e-68258Vitis vinifera1619717_atCF210684hypothetical protein LOC100255647-1e-67At5g54190PORAC.G.S.X.
0.152e-1169Zea maysZm.7136.1.S1_atCO526700NADPH-protochlorophyllide oxidoreductase-6e-11At4g27440PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0015995The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00028Link to KaPPA-View 4Biosynthesis of chlorophyll, proto- and siroheme



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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