CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54170

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.73 85.5 At5g54170 835505 - F:molecular_function unknown;P:response to wounding;C:unknown;MPO S.X. H.G.
0.67 81.6 At1g44350 841026 ILL6 encodes a protein similar to IAA amino acid conjugate hydrolase. S.X. H.G.
0.67 81.6 At3g51450 824308 strictosidine synthase family protein F:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;BPMOAF S.X. H.G.
0.60 75.7 At2g06050 815160 OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. S.X. H.G.
0.44 57.2 At2g29450 817494 ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5) Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
116.4 99.9 E-MEXP-1443-raw-cel-1581869921
108.2 99.9 E-MEXP-1443-raw-cel-1581869863
58.0 99.8 GSM204069 protoplast_hypoxia_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
56.6 99.8 E-MEXP-807-raw-cel-1173273116
53.0 99.8 E-MEXP-449-raw-cel-676423187
50.7 99.8 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
50.0 99.8 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
46.9 99.8 E-MEXP-807-raw-cel-1173273170
45.5 99.8 GSM142855 MG001_ATH1_A8-Torres-3N3 GSE6176 Impact of Type III effectors on plant defense responses
44.0 99.8 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.12 7e-7 56 At1g64720 842780 CP5 membrane related protein CP5 C.G. S.X.
0.07 1e-2 42 At4g14500 827097 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO C.G. S.X.
0.01 1e-2 42 At1g79020 844243 transcription factor-related F:transcription factor activity;P:regulation of transcription;C:unknown;MFPO C.G. S.X.
0.02 4e-2 40 At4g28640 828982 IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11) Auxin induced gene, IAA11 (IAA11). C.G. S.X.
0.02 4e-2 40 At4g12740 826886 adenine-DNA glycosylase-related / MYH-related F:hydrolase activity, 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:unknown;MOBFPVA C.G. S.X.
0.01 4e-2 40 At3g19240 821458 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;FOPM C.G. S.X.
0.01 4e-2 40 At1g74260 843766 PUR4 (purine biosynthesis 4) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development. C.G. S.X.
0.02 2e-1 38 At5g24050 832470 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-7 57 Glycine max GmaAffx.85723.1.S1_at AW101029 - - 1e-7 At5g54170 - C.G. S.X.
0.07 2e-8 59 Hordeum vulgare Contig3338_s_at Contig3338 - - 8e-4 At3g23080 - C.G. S.X.
0.04 6e-12 73 Oryza sativa Os04g0119500 AK063189.1 - Membrane related protein-like 2e-2 At1g64720 CP5 C.G. S.X.
0.19 6e-5 50 Populus trichocarpa PtpAffx.1508.1.S1_at CV253876 hypothetical protein - 1e-23 At1g64720 CP5 C.G. S.X.
0.05 1e-8 61 Triticum aestivum Ta.6034.1.S1_at CD454680 - - 2e-5 At1g64720 CP5 C.G. S.X.
0.07 8e-7 54 Vitis vinifera 1617345_s_at CF514945 hypothetical protein LOC100247984 - 3e-21 At1g64720 CP5 C.G. S.X.
0.03 1e+0 34 Zea mays Zm.14099.1.A1_at CO531535 hypothetical protein AY107844 /// hypothetical protein LOC100191642 - 2e+0 At4g14500 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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