CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g54020

Gene name zinc ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g54020 835485 zinc ion binding F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF S.X. H.G.
0.75 86.9 At1g50580 841480 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF S.X. H.G.
0.57 73.8 At1g64910 842799 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOF S.X. H.G.
0.44 57.2 At5g59930 836115 DC1 domain-containing protein / UV-B light-insensitive protein, putative F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;POMF S.X. H.G.
0.43 55.3 At1g64920 842800 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO S.X. H.G.
0.33 38.1 At2g04680 815011 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
342.4 100.0 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
221.1 100.0 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
145.2 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
119.0 99.9 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
91.3 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
83.8 99.9 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
75.0 99.9 GSM184844 Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
68.6 99.9 GSM265423 Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
67.3 99.8 GSM133985 Birnbaum_1-15_StageIII-4_Rep4_ATH1 GSE5749 A gene expression map of the Arabidopsis root
67.3 99.8 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.64 0 785 At5g54050 835488 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOF C.G. S.X.
0.49 0 761 At5g54030 835486 DC1 domain-containing protein F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.57 0 755 At5g54040 835487 DC1 domain-containing protein F:unknown;P:intracellular signaling cascade;C:cellular_component unknown;PMOF C.G. S.X.
0.54 1e-169 597 At5g29624 833061 DC1 domain-containing protein F:zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF C.G. S.X.
0.56 5e-144 511 At4g14980 827157 - F:unknown;P:intracellular signaling cascade;C:unknown;POMF C.G. S.X.
0.48 2e-124 446 At5g44770 834506 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:unknown;PMO C.G. S.X.
0.41 1e-70 268 At2g04500 814991 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:intracellular;POM C.G. S.X.
0.12 2e-23 111 At3g07000 819885 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO C.G. S.X.
0.14 2e-23 111 At3g06990 819884 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max GmaAffx.41683.1.S1_at BM176987 - - 2e-1 At5g62020 AT-HSFB2A C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig15332_at Contig15332 - - 6e-12 At2g27550 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) C.G. S.X.
0.02 4e-1 38 Oryza sativa OsAffx.23713.1.S1_at - - - 0 C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.41501.2.S1_at BU885311 hypothetical protein - 6e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.58712.1.S1_at CA617012 - - 1e-4 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1622825_at CF206617.1 - - 2e+0 At3g20550 DDL (DAWDLE) C.G. S.X.
0.02 4e-1 36 Zea mays Zm.7010.3.S1_at AI691447 - - 5e-2 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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