CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g53990

Gene name glycosyltransferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g53990 835482 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOFV S.X. H.G.
0.40 50.8 At4g31100 829237 wall-associated kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.40 50.8 At5g65790 836708 MYB68 (MYB DOMAIN PROTEIN 68) Encodes a putative MYB transcription factor. S.X. H.G.
0.33 38.1 At2g26290 817169 ARSK1 (root-specific kinase 1) F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA S.X. H.G.
0.05 1.1 At1g22440 838850 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
311.2 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
272.4 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
219.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
144.4 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
118.5 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.7 99.9 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
89.2 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.4 99.9 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
77.0 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.84 0 967 At1g64910 842799 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOF C.G. S.X.
0.83 0 696 At1g64920 842800 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO C.G. S.X.
0.41 3e-114 412 At5g54010 835484 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMOBF C.G. S.X.
0.35 1e-82 307 At4g27560 828865 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:response to salt stress, N-terminal protein myristoylation;C:cellular_component unknown;PMBFOV C.G. S.X.
0.56 7e-78 291 At4g09500 826534 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMOBF C.G. S.X.
0.64 6e-69 262 At2g22930 816824 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBOF C.G. S.X.
0.32 2e-62 240 At4g27570 828866 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, metabolic process;C:cellular_component unknown;PMBFVO C.G. S.X.
0.45 2e-44 180 At1g50580 841480 glycosyltransferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBOF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-8 59 Glycine max GmaAffx.6567.1.S1_at CD403256 - - 6e-18 At4g27560 glycosyltransferase family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HS08K01u_at HS08K01u - - 4e+0 At5g29050 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os04g0274300 9632.m01879 - Arabinoxylan arabinofuranohydrolase isoenzymeAXAH-II 3e+0 At2g23320 WRKY15 C.G. S.X.
0.07 5e-21 103 Populus trichocarpa PtpAffx.209867.1.S1_at pmrna19442 hypothetical protein - 2e-7 At2g22930 glycosyltransferase family protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.5381.1.S1_at CA712883 - - 1e-3 At3g07990 SCPL27 (serine carboxypeptidase-like 27) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1615596_s_at CF415291 hypothetical protein LOC100264822 - 1e-4 At2g36320 zinc finger (AN1-like) family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.11773.2.A1_a_at CK347605 hypothetical protein LOC100277518 - 1e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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