Gene omics information

Query gene ID At5g53950
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7284.8At5g53950835478CUC2 (CUP-SHAPED COTYLEDON 2)Transcriptional activator of the NAC gene family, with CUC1 redundantly required for embryonic apical meristem formation, cotyledon separation and expression of STM. Proper timing of CUC2 expression is required to maintain the phyllotactic pattern initiated in the meristem. CUC2 expression in leaf sinus region is required for serration and the extent of serration is modulated by mir164A mediated repression of CUC2.S.X.H.G.
0.3541.6At4g27510828860unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.3439.8At2g21800816716ATEME1A (ARABIDOPSIS ESSENTIAL MEIOTIC ENDONUCLEASE 1A)Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.S.X.H.G.
0.3032.1At5g48820834940ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. Binds to D type and CDC2A cyclins and may inhibit cell cycle. Seven KRP genes were found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization.S.X.H.G.
0.2930.3At3g10310820193ATP binding / microtubule motorF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPS.X.H.G.
0.2830.3At1g17920838371HDG12 (HOMEODOMAIN GLABROUS 12)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.S.X.H.G.
0.2830.3At1g27880839681ATP-dependent DNA helicase, putativeF:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.2522.6At3g58770825046unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.2319.3At1g01370839104HTR12Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
87.399.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
65.899.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.307e-59228At3g15170820748CUC1 (CUP-SHAPED COTYLEDON1)Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.C.G.S.X.
0.143e-24113At5g18270831945ANAC087F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.087e-1995At3g04060819561anac046 (Arabidopsis NAC domain containing protein 46)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
0.181e-1481At3g18400821369anac058 (Arabidopsis NAC domain containing protein 58)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POC.G.S.X.
0.162e-1377At2g24430816979ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PMFC.G.S.X.
0.156e-1375At5g39610833957ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510.C.G.S.X.
0.143e-1273At1g76420843975CUC3 (CUP SHAPED COTYLEDON3)Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.179e-1375Glycine maxGmaAffx.90313.1.S1_atCF806038NAC domain protein-9e-11At5g39610ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)C.G.S.X.
0.057e-238Hordeum vulgareContig8993_atContig8993--1e-2At5g61430ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)C.G.S.X.
0.135e-963Oryza sativaOs09g0497900AK102511.1-No apical meristem (NAM) protein domain containingprotein1e-21At3g18400anac058 (Arabidopsis NAC domain containing protein 58)C.G.S.X.
0.328e-44178Populus trichocarpaPtpAffx.214805.1.S1_atpmrna28658NAC domain protein, IPR003441-3e-34At3g15170CUC1 (CUP-SHAPED COTYLEDON1)C.G.S.X.
0.131e-552Triticum aestivumTa.9333.3.S1_a_atBJ288880--5e-6At5g53950CUC2 (CUP-SHAPED COTYLEDON 2)C.G.S.X.
0.041e-859Vitis vinifera1610480_atCA809362hypothetical protein LOC100254239-3e-9At1g56010NAC1C.G.S.X.
0.064e-342Zea maysZm.5914.1.A1_atCA402103nac4 protein-4e-12At3g04060anac046 (Arabidopsis NAC domain containing protein 46)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010072The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers.
XGO:0010160The regionalization process that specifies organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues.
XGO:0010223The process that gives rise to secondary (or auxiliary or axillary) shoots in plants. This process pertains to the initial formation of a structure from unspecified parts. These secondary shoots originate from secondary meristems initiated in the axils of leaf primordia. Axillary meristems function like the shoot apical meristem of the primary shoot initating the development of lateral organs.
XGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
XGO:0048504Any process that modulates the rate, frequency or extent of organ formation at a consistent predetermined time point during development.
CGO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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