CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g53870

Gene name plastocyanin-like domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA S.X. H.G.
0.73 85.5 At2g04032 814931 ZIP7 (ZINC TRANSPORTER 7 PRECURSOR) F:cation transmembrane transporter activity, zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity;P:cation transport, zinc ion transport, metal ion transport;C:endomembrane system, integral to membrane, membrane;FMPOB S.X. H.G.
0.60 75.7 At2g28210 817367 ATACA2 (ALPHA CARBONIC ANHYDRASE 2) F:carbonate dehydratase activity, zinc ion binding;P:response to carbon dioxide, one-carbon compound metabolic process;C:cellular_component unknown;MBPOFV S.X. H.G.
0.50 65.3 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA S.X. H.G.
0.33 38.1 At1g74810 843820 BOR5 F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1124.6 100.0 E-ATMX-33-raw-cel-1562596241
341.7 100.0 E-ATMX-33-raw-cel-1562596174
262.4 100.0 E-ATMX-33-raw-cel-1562596197
141.4 99.9 E-ATMX-33-raw-cel-1562596103
77.2 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
73.6 99.9 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
70.5 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
69.4 99.9 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
65.3 99.8 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
62.4 99.8 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 9e-6 52 At4g32490 829384 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBOVMFA C.G. S.X.
0.05 2e-3 44 At4g28365 828952 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PBFM C.G. S.X.
0.02 4e-2 40 At3g27150 822334 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA C.G. S.X.
0.02 1e-1 38 At3g53630 824531 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At1g68810 843213 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOB C.G. S.X.
0.01 6e-1 36 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA C.G. S.X.
0.03 6e-1 36 At5g59300 836048 UBC7 (UBIQUITIN CARRIER PROTEIN 7) ubiquitin conjugating enzyme E2 C.G. S.X.
0.01 6e-1 36 At5g40890 834090 ATCLC-A (CHLORIDE CHANNEL A) Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate. C.G. S.X.
0.02 6e-1 36 At5g02610 831853 60S ribosomal protein L35 (RPL35D) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, plasma membrane;MOBAFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max PsAffx.C12000069_at PsAffx.C12000069 - - 2e-2 At1g67670 unknown protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HM08L19r_at HM08L19r - - 3e-2 At3g09980 unknown protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os06g0221300 AK108233.1 - Dehydration stress-induced protein 3e-2 At3g10040 transcription factor C.G. S.X.
0.03 1e-5 52 Populus trichocarpa PtpAffx.209962.1.S1_s_at pmrna19647 hypothetical protein - 5e-1 At4g30590 plastocyanin-like domain-containing protein C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.9940.1.A1_at BJ235128 - - 5e-4 At5g53870 plastocyanin-like domain-containing protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1615437_at CF201928.1 - - 2e-2 At1g12665 - C.G. S.X.
0.03 9e-1 34 Zea mays Zm.6768.1.S1_at AI396277 anther-specific proline-rich protein APG - 2e-4 At1g29670 GDSL-motif lipase/hydrolase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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