CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g53750

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At5g53750 835456 - F:molecular_function unknown;P:response to wounding;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At2g34930 818058 disease resistance family protein F:protein binding;P:signal transduction, defense response to fungus, defense response;C:cell wall;PMOBFAV S.X. H.G.
0.61 76.7 At2g27690 817315 CYP94C1 Encodes a CYP94C1. Has highest omega-hydroxylase activity with 9,10-epoxystearic acid, while also metabolized lauric acid (C12:0) and C18 unsaturated fatty acids. Gene expression is induced in response to wounding and jasmonic acid treatment. S.X. H.G.
0.55 70.6 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.44 57.2 At5g54720 835561 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF S.X. H.G.
0.42 53.9 At4g23200 828419 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:vacuole;MPOBFVA S.X. H.G.
0.37 45.0 At1g17420 838314 LOX3 Lipoxygenase S.X. H.G.
0.33 38.1 At1g65390 842851 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane, chloroplast;PB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
272.3 100.0 E-MEXP-449-raw-cel-676423253
192.1 100.0 GSM131132 AtGen_B-18_2-4-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
164.7 100.0 GSM131148 AtGen_B-34_3-6-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
140.8 99.9 GSM131146 AtGen_B-32_3-4-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
128.6 99.9 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
126.7 99.9 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
121.4 99.9 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
117.9 99.9 GSM131131 AtGen_B-17_2-3-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
102.8 99.9 GSM131135 AtGen_B-21_2-7-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
85.5 99.9 GSM131118 AtGen_B-4_1-4-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 6e-32 139 At4g27460 828855 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 2e-1 38 At3g25590 822146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.02 6e-1 36 At4g39710 830126 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BMOPFA C.G. S.X.
0.01 6e-1 36 At4g33945 829540 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF C.G. S.X.
0.01 6e-1 36 At3g05970 819767 LACS6 (long-chain acyl-CoA synthetase 6) encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes C.G. S.X.
0.01 2e+0 34 At4g20230 827770 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PFO C.G. S.X.
0.02 2e+0 34 At4g39230 830078 isoflavone reductase, putative encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 36 Glycine max Gma.12376.1.S1_at BE820394 - - 8e-4 At4g27460 CBS domain-containing protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig5034_at Contig5034 - - 1e+0 At2g11005 glycine-rich protein C.G. S.X.
0.03 3e-1 38 Oryza sativa Os06g0180600 9634.m00760 - - 2e+0 At1g65770 F-box family protein C.G. S.X.
0.04 2e-7 57 Populus trichocarpa PtpAffx.82118.1.A1_at CV243747 hypothetical protein - 1e-7 At5g53750 - C.G. S.X.
0.04 3e+0 34 Triticum aestivum Ta.22805.1.S1_at CA703990 - - 8e-1 At5g53750 - C.G. S.X.
0.06 5e-5 48 Vitis vinifera 1610138_at CF404355 hypothetical protein LOC100267148 - 3e-13 At4g27460 CBS domain-containing protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.4815.1.A1_at AI746001 - - 1e+0 At5g14170 CHC1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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