Gene omics information

Query gene ID At5g53660
Gene name AtGRF7 (GROWTH-REGULATING FACTOR 7)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At5g53660835447AtGRF7 (GROWTH-REGULATING FACTOR 7)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.S.X.H.G.
0.8391.4At5g54190835507PORAlight-dependent NADPH:protochlorophyllide oxidoreductase AS.X.H.G.
0.8089.8At5g44440834471FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMS.X.H.G.
0.8089.8At5g57240835830ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPS.X.H.G.
0.6781.6At4g14130827051XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)xyloglucan endotransglycosylase-related protein (XTR7)S.X.H.G.
0.6781.6At4g35720829724unknown proteinF:unknown;P:unknown;C:unknown;POS.X.H.G.
0.5368.6At2g46990819313IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
140.599.9E-MEXP-1468-raw-cel-1591138721
138.199.9E-MEXP-1468-raw-cel-1591138754
120.399.9E-MEXP-1304-raw-cel-1530618136
104.399.9GSM134513Col-0_4day_dark_-lincomycin_rep1GSE5759red illumination w/o lincomycin
100.499.9E-MEXP-1304-raw-cel-1530618104
87.499.9GSM134515Col-0_4day_dark_+lincomycin_rep1GSE5759red illumination w/o lincomycin
86.299.9E-MEXP-1304-raw-cel-1530618171
85.399.9E-MEXP-1304-raw-cel-1530618235
84.699.9E-MEXP-1468-raw-cel-1591138655
84.199.9E-MEXP-1468-raw-cel-1591138688
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.074e-859At4g37740829930AtGRF2 (GROWTHREGULATING FACTOR 2)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerC.G.S.X.
0.074e-859At4g24150828515AtGRF8 (GROWTH-REGULATING FACTOR 8)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.C.G.S.X.
0.059e-652At3g13960820609AtGRF5 (GROWTH-REGULATING FACTOR 5)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.C.G.S.X.
0.014e-240At3g15220820753protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:spindle, cytoplasm;MPOBFVAC.G.S.X.
0.054e-240At2g06200815176AtGRF6 (GROWTH-REGULATING FACTOR 6)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flowerC.G.S.X.
0.011e-138At5g23720832437PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.C.G.S.X.
0.041e-138At3g52910824457AtGRF4 (GROWTH-REGULATING FACTOR 4)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-1067Glycine maxGma.8263.1.S1_atBU549379--1e-9At2g36400AtGRF3 (GROWTH-REGULATING FACTOR 3)C.G.S.X.
0.021e+034Hordeum vulgareContig14163_atContig14163--8e-12At2g36400AtGRF3 (GROWTH-REGULATING FACTOR 3)C.G.S.X.
0.024e+034Oryza sativaOs05g03722009633.m02807-Surfeit locus 6 family protein5e-1At5g05210nucleolar matrix protein-relatedC.G.S.X.
0.073e-344Populus trichocarpaPtpAffx.118968.1.S1_atBU831327hypothetical protein-2e-11At4g24150AtGRF8 (GROWTH-REGULATING FACTOR 8)C.G.S.X.
0.039e+032Triticum aestivumTaAffx.5290.1.S1_atCA716112--1e-2At5g19875unknown proteinC.G.S.X.
0.034e-548Vitis vinifera1618611_atCB971624hypothetical protein LOC100261588-6e-13At4g37740AtGRF2 (GROWTHREGULATING FACTOR 2)C.G.S.X.
0.022e-136Zea maysZm.813.2.A1_atAY103619.1--5e-15At4g14160transport protein, putativeC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010114A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0010218A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
SGO:0048366The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage