Gene omics information

Query gene ID At5g53620
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4253.9At5g53620835444unknown proteinF:unknown;P:biological_process unknown;C:unknown;MOBFPAVS.X.H.G.
0.7586.9At3g61650825338TUBG1 (GAMMA-TUBULIN)Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.S.X.H.G.
0.6781.6At5g27740832836EMB2775 (EMBRYO DEFECTIVE 2775)F:nucleoside-triphosphatase activity, DNA binding, nucleotide binding;P:DNA replication;C:unknown;OBMAFPVS.X.H.G.
0.5773.8At4g32420829377peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:unknown;MOBFPVAS.X.H.G.
0.4457.2At5g51660835240CPSF160F:nucleic acid binding;P:mRNA cleavage, mRNA polyadenylation;C:nucleus;MFPOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.099.4GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
14.899.4GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
14.099.4GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
13.999.4GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
13.299.4GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
12.899.3GSM142905WW002_ATH1_A1-willa-CON-REP3GSE6181Assembly of the cell wall pectic matrix.
11.699.3E-MEXP-1246-raw-cel-1504120201
11.399.3E-MEXP-1246-raw-cel-1504120261
10.999.2GSM133953Murray_2-9_T16-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
10.999.2GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-138At5g19020832021pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFC.G.S.X.
0.013e-138At5g27310832789-F:molecular_function unknown;P:transcription;C:plasma membrane;OMPBFC.G.S.X.
0.013e-138At2g27780817325-F:molecular_function unknown;P:transcription;C:nucleus;OMPBFAVC.G.S.X.
0.011e+036At4g02070828147MSH6 (MUTS HOMOLOG 6)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.C.G.S.X.
0.011e+036At4g02030828155-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.011e+036At3g22220821786hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.095e-1997Glycine maxGma.2845.1.S1_atBI426775--6e-20At5g53620unknown proteinC.G.S.X.
0.044e-1169Hordeum vulgareContig4757_atContig4757--9e-11At5g53620unknown proteinC.G.S.X.
0.012e-346Oryza sativaOs08g0543600AK066525.1-Conserved hypothetical protein2e-3At2g41260M17C.G.S.X.
0.104e-1687Populus trichocarpaPtpAffx.212548.1.S1_atpmrna24584hypothetical protein-3e-16At5g53620unknown proteinC.G.S.X.
0.033e-138Triticum aestivumTa.18260.1.S1_atCA499942--2e-1At5g53620unknown proteinC.G.S.X.
0.093e-26119Vitis vinifera1620772_atCF607066hypothetical protein LOC100252015-3e-26At5g53620unknown proteinC.G.S.X.
0.032e+034Zea maysZm.10720.1.A1_atAI461586--3e+0At5g53620unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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