CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g53460

Gene name GLT1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g53460 835427 GLT1 NADH-dependent glutamate synthase S.X. H.G.
0.44 57.2 At1g16300 838199 GAPCP-2 F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid;BOPFMA S.X. H.G.
0.38 46.7 At2g41220 818721 GLU2 (GLUTAMATE SYNTHASE 2) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. S.X. H.G.
0.19 12.7 At1g80830 844422 NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1) Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. S.X. H.G.
0.16 8.8 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
39.5 99.8 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.3 99.7 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
35.9 99.7 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
35.0 99.7 GSM184511 Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.5 99.7 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
33.2 99.7 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
31.6 99.7 GSM184490 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.1 99.7 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
31.0 99.7 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
27.8 99.7 GSM184528 Stele root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-7 59 At5g04140 830292 GLU1 (GLUTAMATE SYNTHASE 1) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression in leaves is induced by light and sucrose. Proposed to be involved in photorespiration and nitrogen assimilation. C.G. S.X.
0.00 2e-1 40 At4g15215 827186 PDR13 F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.00 2e-1 40 At4g15230 827187 PDR2 (PLEIOTROPIC DRUG RESISTANCE 2) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:membrane;BOMAFPV C.G. S.X.
0.01 2e-1 40 At3g02280 820417 flavodoxin family protein F:electron carrier activity, oxidoreductase activity, FMN binding, iron ion binding;P:biological_process unknown;C:cellular_component unknown;BMOFPA C.G. S.X.
0.01 2e-1 40 At2g40690 818664 GLY1 Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway. C.G. S.X.
0.01 2e-1 40 At2g22410 816772 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFB C.G. S.X.
0.02 2e-1 40 At2g41220 818721 GLU2 (GLUTAMATE SYNTHASE 2) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. C.G. S.X.
0.01 8e-1 38 At2g32150 817774 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OBPFAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-43 180 Glycine max Gma.18005.3.S1_at BG725319 - - 7e-45 At5g53460 GLT1 C.G. S.X.
0.15 2e-37 159 Hordeum vulgare Contig5244_at Contig5244 - - 1e-37 At5g53460 GLT1 C.G. S.X.
0.34 3e-144 515 Oryza sativa Os01g0681900 AK105755.1 - Glutamate synthase [NADH], chloroplast precursor(EC 1.4.1.14) (NADH- GOGAT) 1e-144 At5g53460 GLT1 C.G. S.X.
0.07 3e-10 69 Populus trichocarpa PtpAffx.210249.1.S1_at pmrna20177 hypothetical protein - 3e-11 At5g53460 GLT1 C.G. S.X.
0.10 5e-36 155 Triticum aestivum Ta.2641.1.S1_at CD454749 - - 1e-36 At5g53460 GLT1 C.G. S.X.
0.07 6e-36 153 Vitis vinifera 1618513_at CF513159 similar to GLT1 (NADH-dependent glutamate synthase 1 gene) - 2e-36 At5g53460 GLT1 C.G. S.X.
0.04 3e-23 111 Zea mays Zm.4684.1.A1_at BQ619021 - - 1e-23 At5g53460 GLT1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
X GO:0006537 The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.
S GO:0042128 The uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00250 Alanine, aspartate and glutamate metabolism
00910 Nitrogen metabolism
01100 Metabolic pathways
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