Gene omics information

Query gene ID At5g53370
Gene name PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g53370835418PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)F:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMOS.X.H.G.
0.157.8At4g38360829993unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPFOS.X.H.G.
0.114.1At3g46510823804PUB13 (PLANT U-BOX 13)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.S.X.H.G.
0.051.1At1g65960842908GAD2 (GLUTAMATE DECARBOXYLASE 2)glutamate decarboxylase (GAD2)S.X.H.G.
0.020.4At2g31820817739ankyrin repeat family proteinF:protein binding;P:unknown;C:plasma membrane;MOFBPVAS.X.H.G.
0.010.2At3g52880824454monodehydroascorbate reductase, putativeEncodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.799.7GSM142637MC002_ATH1_A5.3-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.999.7GSM131656ATGE_27_BGSE5633AtGenExpress: Developmental series (shoots and stems)
31.299.7E-MEXP-265-raw-cel-414617783
30.799.7GSM142636MC002_ATH1_A5.2-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.399.7E-MEXP-265-raw-cel-414617695
25.999.7GSM142635MC002_ATH1_A5.1-dubos-5kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
25.799.7GSM131655ATGE_27_AGSE5633AtGenExpress: Developmental series (shoots and stems)
24.299.6GSM131657ATGE_27_CGSE5633AtGenExpress: Developmental series (shoots and stems)
23.699.6GSM131659ATGE_28_B2GSE5633AtGenExpress: Developmental series (shoots and stems)
23.099.6E-MEXP-265-raw-cel-414617890
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.207e-1479At3g49220824083pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
0.044e-963At2g45220819130pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOMC.G.S.X.
0.034e-654At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
0.052e-552At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMC.G.S.X.
0.011e-346At1g02810838078pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.034e-344At4g02300827708pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.014e-344At3g14300820650ATPMEPCRCF:pectinesterase activity;P:cell wall modification;C:cell wall;PBFMAC.G.S.X.
0.016e-240At4g33220829458enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.211e-1275Glycine maxGma.7198.1.S1_atBI968104--8e-13At5g53370PMEPCRF (PECTIN METHYLESTERASE PCR FRAGMENT F)C.G.S.X.
0.022e+034Hordeum vulgareContig22053_atContig22053--1e-4At2g44610RAB6AC.G.S.X.
0.034e-138Oryza sativaOs01g0880300AK101962.1-Pectinesterase family protein2e-1At3g06830pectinesterase family proteinC.G.S.X.
0.051e-346Populus trichocarpaPtpAffx.67685.1.A1_atDN487860hypothetical protein-1e-4At5g20860pectinesterase family proteinC.G.S.X.
0.029e-136Triticum aestivumTa.8466.2.S1_atCA638771--4e-3At3g57480zinc finger (C2H2 type, AN1-like) family proteinC.G.S.X.
0.037e-238Vitis vinifera1622450_atCB970586--5e-7At2g45220pectinesterase family proteinC.G.S.X.
0.012e+034Zea maysZmAffx.1509.1.S1_at11990232-51--2e-106Atcg00730-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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