Gene omics information

Query gene ID At5g53120
Gene name SPDS3 (SPERMIDINE SYNTHASE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g53120835392SPDS3 (SPERMIDINE SYNTHASE 3)encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.S.X.H.G.
0.2830.3At2g04350814974long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)F:long-chain-fatty-acid-CoA ligase activity, catalytic activity;P:fatty acid biosynthetic process, metabolic process;C:endoplasmic reticulum;BOMFPAVS.X.H.G.
0.2522.6At2g23080816838casein kinase II alpha chain, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAS.X.H.G.
0.2115.8At5g40930834094TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)Form of TOM20, which is a component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteinsS.X.H.G.
0.2115.8At2g43020818904ATPAO2 (Polyamine oxidase 2)F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:cellular_component unknown;BMOPFAS.X.H.G.
0.146.8At5g04410830320NAC2NAC family member, hypothetical transcriptional regulatorS.X.H.G.
0.135.8At2g21270816666ubiquitin fusion degradation UFD1 family proteinF:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:unknown;OFMPABS.X.H.G.
0.124.9At1g49710841394FUT12 (FUCOSYLTRANSFERASE 12)Encodes a protein with core α1,3-fucosyltransferase activity.S.X.H.G.
0.124.9At3g61710825344autophagy protein Apg6 familyF:molecular_function unknown;P:autophagy;C:unknown;MOFBPVAS.X.H.G.
0.124.9At5g59210836039myosin heavy chain-relatedF:unknown;P:biological_process unknown;C:unknown;MOBFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
54.899.8GSM133821Yang_1-6_old-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
45.399.8GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
42.699.8GSM133819Yang_1-4_old-pod_Rep2_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
40.799.8GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
36.699.7E-MEXP-285-raw-cel-440783273
35.099.7E-MEXP-285-raw-cel-440783335
33.699.7GSM184914Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
32.199.7GSM133816Yang_1-1_young-pod_Rep1_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
30.599.7GSM184913Arabidopsis, root cells, cortex, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
26.399.7GSM184924Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.122e-1067At1g23820838993SPDS1 (spermidine synthase 1)Spermidine synthase.C.G.S.X.
0.086e-446At1g70310843367SPDS2 (spermidine synthase 2)Spermidine synthase.C.G.S.X.
0.023e-240At4g224855008156-Encodes a Protease inhibitor/seed storage/LTP family proteinC.G.S.X.
0.023e-240At1g31640840051AGL92 (AGAMOUS-LIKE 92)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.276e-23109Glycine maxGmaAffx.87908.1.S1_atBM270150--2e-23At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.288e-1787Hordeum vulgareContig1210_atContig1210--2e-16At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.182e-861Oryza sativaOs06g0528600AB098063.1-Spermidine synthase 1 (EC 2.5.1.16) (Putrescineaminopropyltransferase 1) (SPDSY 1)1e-8At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.387e-29129Populus trichocarpaPtp.7547.1.S1_atBI120806hypothetical protein-3e-29At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.192e-1377Triticum aestivumTaAffx.86092.1.S1_atCA616812--3e-10At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
0.043e-652Vitis vinifera1619220_atCA816725hypothetical protein LOC100257112-3e-89At1g23820SPDS1 (spermidine synthase 1)C.G.S.X.
0.207e-1787Zea maysZm.6006.1.A1_atAY110392.1spermidine synthase 1-7e-14At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006596The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00013Link to KaPPA-View 4Arginine and proline metabolism (Urea cycle and related metabolism)



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00270Link to KEGG PATHWAYCysteine and methionine metabolism
00330Link to KEGG PATHWAYArginine and proline metabolism
00410Link to KEGG PATHWAYbeta-Alanine metabolism
00480Link to KEGG PATHWAYGlutathione metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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