Gene omics information

Query gene ID At5g53090
Gene name binding / catalytic/ oxidoreductase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4761.2At5g53090835389binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAS.X.H.G.
0.2014.4At2g26360817176bindingF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOS.X.H.G.
0.135.8At5g18070831926DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101)encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).S.X.H.G.
0.124.9At5g01620831716unknown proteinF:unknown;P:unknown;C:endomembrane system;PMS.X.H.G.
0.030.6At1g18690838450transferase/ transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:integral to membrane;PFOMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
167.3100.0GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.499.9GSM184912Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
56.699.8GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
37.899.8GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
35.599.7GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
33.799.7GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
30.599.7GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
29.399.7GSM184897Arabidopsis, root cells, cortex, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
27.799.7GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
27.099.7GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.621e-119430At5g53100835390oxidoreductase, putativeF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
0.711e-91337At4g27760828890FEY (FOREVER YOUNG)Encodes an oxidoreductase required for vegetative shoot apex development. Mutants display disruptions in leaf positioning and meristem maintenance.C.G.S.X.
0.016e-446At3g20150821558kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAVC.G.S.X.
0.016e-136At3g320473769237electron carrier/ heme binding / iron ion binding / monooxygenaseF:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:endomembrane system;MPFBOAVC.G.S.X.
0.012e+034At5g17880831656CSA1 (constitutive shade-avoidance1)Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae.C.G.S.X.
0.012e+034At5g01630831710BRCA2B (BRCA2-LIKE B)Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.C.G.S.X.
0.022e+034At5g01740831686-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBC.G.S.X.
0.012e+034At5g58040835916ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V])Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-859Glycine maxGmaAffx.61197.1.S1_atBE211614--1e-20At4g27760FEY (FOREVER YOUNG)C.G.S.X.
0.021e+034Hordeum vulgarerbags1i23_s_atrbags1i23--2e-16At1g6743060S ribosomal protein L17 (RPL17B)C.G.S.X.
0.038e-859Oryza sativaOs.2246.1.S1_at---0C.G.S.X.
0.301e-42174Populus trichocarpaPtpAffx.215354.1.S1_atpmrna29492hypothetical protein-8e-43At5g53090binding / catalytic/ oxidoreductaseC.G.S.X.
0.066e-756Triticum aestivumTa.23145.1.S1_s_atBJ262993--3e+0At4g27760FEY (FOREVER YOUNG)C.G.S.X.
0.215e-1787Vitis vinifera1614470_atBQ798825hypothetical protein LOC100254267-1e-16At5g53090binding / catalytic/ oxidoreductaseC.G.S.X.
0.021e+130Zea maysZmAffx.583.1.A1_atAI714946ubiquitin-like protein SMT3-3e+0At3g21338unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0007275The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00028Link to KaPPA-View 4Biosynthesis of chlorophyll, proto- and siroheme



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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