CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g53090

Gene name binding / catalytic/ oxidoreductase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At5g53090 835389 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA S.X. H.G.
0.20 14.4 At2g26360 817176 binding F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO S.X. H.G.
0.13 5.8 At5g18070 831926 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). S.X. H.G.
0.12 4.9 At5g01620 831716 unknown protein F:unknown;P:unknown;C:endomembrane system;PM S.X. H.G.
0.03 0.6 At1g18690 838450 transferase/ transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:integral to membrane;PFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.3 100.0 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
71.4 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
56.6 99.8 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
37.8 99.8 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
35.5 99.7 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
33.7 99.7 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
30.5 99.7 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
29.3 99.7 GSM184897 Arabidopsis, root cells, cortex, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
27.7 99.7 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
27.0 99.7 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.62 1e-119 430 At5g53100 835390 oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA C.G. S.X.
0.71 1e-91 337 At4g27760 828890 FEY (FOREVER YOUNG) Encodes an oxidoreductase required for vegetative shoot apex development. Mutants display disruptions in leaf positioning and meristem maintenance. C.G. S.X.
0.01 6e-4 46 At3g20150 821558 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFPBAV C.G. S.X.
0.01 6e-1 36 At3g32047 3769237 electron carrier/ heme binding / iron ion binding / monooxygenase F:electron carrier activity, monooxygenase activity, iron ion binding, heme binding;P:biological_process unknown;C:endomembrane system;MPFBOAV C.G. S.X.
0.01 2e+0 34 At5g17880 831656 CSA1 (constitutive shade-avoidance1) Encodes a TIR-NBS-LRR protein CSA1 that functions in photomorphogenic development. csa1 mutants display a constitutive shade-avoidance (CSA) phenotype (long stem) under high red:far-red rations (i.e. in the absence of a shade signal). csa1 mutation can be complemented by RPS4, a TIR-NBS-LRR protein that confers resistance against bacterium Pseudomonas syringae. C.G. S.X.
0.01 2e+0 34 At5g01630 831710 BRCA2B (BRCA2-LIKE B) Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex. C.G. S.X.
0.02 2e+0 34 At5g01740 831686 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 2e+0 34 At5g58040 835916 ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]) Encodes a subunit of the polyadenylation apparatus that interacts with and stimulates the activity of poly(A) polymerase. Additionally , it interacts with several polyadenylation factor subunits and is an RNA-binding protein. It is suggested that this protein coordinates a number of polyadenylation factor subunits with PAP and with RNA. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-8 59 Glycine max GmaAffx.61197.1.S1_at BE211614 - - 1e-20 At4g27760 FEY (FOREVER YOUNG) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare rbags1i23_s_at rbags1i23 - - 2e-16 At1g67430 60S ribosomal protein L17 (RPL17B) C.G. S.X.
0.03 8e-8 59 Oryza sativa Os.2246.1.S1_at - - - 0 C.G. S.X.
0.30 1e-42 174 Populus trichocarpa PtpAffx.215354.1.S1_at pmrna29492 hypothetical protein - 8e-43 At5g53090 binding / catalytic/ oxidoreductase C.G. S.X.
0.06 6e-7 56 Triticum aestivum Ta.23145.1.S1_s_at BJ262993 - - 3e+0 At4g27760 FEY (FOREVER YOUNG) C.G. S.X.
0.21 5e-17 87 Vitis vinifera 1614470_at BQ798825 hypothetical protein LOC100254267 - 1e-16 At5g53090 binding / catalytic/ oxidoreductase C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.583.1.A1_at AI714946 ubiquitin-like protein SMT3 - 3e+0 At3g21338 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007275 The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00028 Biosynthesis of chlorophyll, proto- and siroheme

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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