Gene omics information

Query gene ID At5g52920
Gene name PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7284.8At5g52920835369PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.S.X.H.G.
0.6478.9At5g35360833497CAC2Encodes biotin carboxylase subunit (CAC2).S.X.H.G.
0.5873.8At2g05990815152MOD1 (MOSAIC DEATH 1)Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves.S.X.H.G.
0.5368.6At1g01090839429PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)pyruvate dehydrogenase E1 alpha subunitS.X.H.G.
0.5065.3At2g34590818024transketolase family proteinF:pyruvate dehydrogenase (acetyl-transferring) activity, transketolase activity;P:pollen tube development;C:chloroplast, chloroplast envelope;BOMPFAS.X.H.G.
0.4862.5At5g10160830880beta-hydroxyacyl-ACP dehydratase, putativeF:hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast, membrane;BOPMS.X.H.G.
0.4761.2At2g43360818937BIO2 (BIOTIN AUXOTROPH 2)Catalyzes the conversion of dethiobiotin to biotin.S.X.H.G.
0.4659.8At5g46290834671KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,S.X.H.G.
0.4457.2At3g25860822181LTA2Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect.S.X.H.G.
0.4152.4At2g26640817205KCS11 (3-KETOACYL-COA SYNTHASE 11)Encodes KCS11, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
33.199.7GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.399.7GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
20.299.6GSM133758Lindsey_1-11_heart-stage-root_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.099.4GSM25316548h into an extended nightBGSE10016Expression data of Arabidopsis thaliana rosettes in an extended night
14.799.4GSM311288Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
14.799.4GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.799.4GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.599.4GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
13.199.4E-MEXP-1299-raw-cel-1519903848
12.499.3GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.196e-1169At1g32440840138PKp3 (plastidial pyruvate kinase 3)encodes a chloroplast pyruvate kinase beta subunit. The enzyme is less active than the other chloroplast pyruvate kinase beta subunit encoded by AT5G52920. Involved in seed oil biosynthesis. Can partially complement the AT5G52920 mutant.C.G.S.X.
0.029e-756At3g22960821870PKP-ALPHAencodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.C.G.S.X.
0.016e-240At1g20370838625tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAPC.G.S.X.
0.019e-136At5g50170835082C2 domain-containing protein / GRAM domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOC.G.S.X.
0.019e-136At5g56350835735pyruvate kinase, putativeF:pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAC.G.S.X.
0.019e-136At3g04050819560pyruvate kinase, putativeF:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:cellular_component unknown;BOMPFAC.G.S.X.
0.029e-136At2g39460818531RPL23AA (RIBOSOMAL PROTEIN L23AA)Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.C.G.S.X.
0.019e-136At1g24440839060protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.392e-98361Glycine maxGma.1504.1.S1_atBQ298286--6e-100At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)C.G.S.X.
0.024e-136Hordeum vulgareContig16137_atContig16137--1e+0At1g32440PKp3 (plastidial pyruvate kinase 3)C.G.S.X.
0.465e-81303Oryza sativaOs.41467.1.S1_at---0C.G.S.X.
0.522e-169597Populus trichocarpaPtpAffx.2725.1.A1_atCV239343hypothetical protein-4e-175At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)C.G.S.X.
0.357e-48192Triticum aestivumTa.16760.1.S1_atCA611994--6e-48At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)C.G.S.X.
0.262e-36153Vitis vinifera1617838_atCB008961--2e-80At1g32440PKp3 (plastidial pyruvate kinase 3)C.G.S.X.
0.414e-44178Zea maysZm.5190.1.A1_atCF006531Pyruvate kinase-like-9e-44At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
XGO:0006633The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
XGO:0048316The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves.
CGO:0006096The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00120Link to KaPPA-View 4Phosphoenolpyruvate and Pyruvate metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00010Link to KEGG PATHWAYGlycolysis / Gluconeogenesis
00230Link to KEGG PATHWAYPurine metabolism
00620Link to KEGG PATHWAYPyruvate metabolism
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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