Gene omics information

Query gene ID At5g52910
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At5g52910835368ATIM (TIMELESS)homolog of Drosophila timelessS.X.H.G.
0.6075.7At4g18470827577SNI1Negative regulator of systemic acquired resistance (SAR), repressor of pathogenesis-related PR gene expression which is removed by NPR1 upon induction of SAR. Encodes leucine-rich nuclear protein. Conserved in plants, with putative orthologs found in several plant species. Many NPR1-dependent PR gene are specifically derepressed in the sni1 mutant. The structural similarity of SNI1 to Armadillo repeat proteins implies that SNI1 may form a scaffold for interaction with proteins that modulate transcription. Histone modification may be involved in SNI1-mediated repression of PR genes.S.X.H.G.
0.4152.4At3g60660825237unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOS.X.H.G.
0.3643.6At1g27880839681ATP-dependent DNA helicase, putativeF:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:DNA recombination;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.2624.4At5g67100836845ICU2 (INCURVATA2)Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.S.X.H.G.
0.2014.4At1g65470842858FAS1 (FASCIATA 1)Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.S.X.H.G.
0.157.8At1g78770844213cell division cycle family proteinF:binding;P:cell cycle;C:cellular_component unknown;BOMAFPS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
196.8100.0GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
74.399.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
71.799.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At5g02880831758UPL4encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.C.G.S.X.
0.014e-138At5g23960832461TPS21 (TERPENE SYNTHASE 21)Encodes a sesquiterpene synthase involved in generating all of the group A sesquiterpenes found in the Arabidopsis floral volatile blend. Strongly expressed in the stigma.C.G.S.X.
0.014e-138At3g10845820254RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPFOBC.G.S.X.
0.014e-138At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOC.G.S.X.
0.014e-138At2g14540815941serpin family protein / serine protease inhibitor family proteinF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAFC.G.S.X.
0.014e-138At1g01770837323unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;OBFMPC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxGmaAffx.88364.1.A1_atAI507797--3e+0At5g46840RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.013e+034Hordeum vulgareContig25813_atContig25813--2e+0At5g17280unknown proteinC.G.S.X.
0.019e-138Oryza sativaOsAffx.19944.1.S1_at---0C.G.S.X.
0.087e-1377Populus trichocarpaPtpAffx.218294.1.S1_atpmrna33855hypothetical protein-6e-13At5g52910ATIM (TIMELESS)C.G.S.X.
0.015e-138Triticum aestivumTa.6324.2.S1_a_atBJ302198--1e+0At2g21385unknown proteinC.G.S.X.
0.011e-138Vitis vinifera1621122_atCB834211--4e-10Atmg00300-C.G.S.X.
0.017e-136Zea maysZm.6132.1.A1_atAI670659hypothetical protein LOC100191258-4e-1At4g00620tetrahydrofolate dehydrogenase/cyclohydrolase, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0042752Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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