CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52810

Gene name ornithine cyclodeaminase/mu-crystallin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.22 17.5 At5g52810 835358 ornithine cyclodeaminase/mu-crystallin family protein F:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFP S.X. H.G.
0.73 85.5 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB S.X. H.G.
0.67 81.6 At3g60420 825213 - F:unknown;P:unknown;C:cellular_component unknown;OBFPM S.X. H.G.
0.40 50.8 At4g03450 827913 ankyrin repeat family protein F:protein binding;P:unknown;C:unknown;MOPFBVA S.X. H.G.
0.13 5.8 At3g56400 824807 WRKY70 member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
125.8 99.9 GSM244455 Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1 GSE9674 Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
89.3 99.9 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
67.3 99.8 E-MEXP-739-raw-cel-1099467330
63.2 99.8 GSM134458 St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
55.3 99.8 E-MEXP-739-raw-cel-1099467303
54.8 99.8 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
47.0 99.8 GSM134369 St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
44.0 99.8 E-MEXP-739-raw-cel-1099467321
43.3 99.8 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
43.1 99.8 GSM134359 St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1 GSE5753 Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-1 38 At5g60060 836128 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-1 38 At3g56300 824797 tRNA synthetase class I (C) family protein F:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:cysteinyl-tRNA aminoacylation, translation;C:cytoplasm;OBMFAPV C.G. S.X.
0.02 1e-1 38 At1g22930 838900 T-complex protein 11 F:unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.02 5e-1 36 At5g15850 831442 COL1 (constans-like 1) Homologous to the flowering-time gene CONSTANS. C.G. S.X.
0.02 5e-1 36 At5g43520 834372 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF C.G. S.X.
0.01 5e-1 36 At2g02150 814746 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:endomembrane system;POMFBA C.G. S.X.
0.02 5e-1 36 At1g71100 843450 RSW10 (RADIAL SWELLING 10) Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. C.G. S.X.
0.02 5e-1 36 At1g32430 840137 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.83023.1.S1_at BQ081537 - - 2e-2 At1g53180 unknown protein C.G. S.X.
0.03 6e-5 48 Hordeum vulgare HV10E20u_at HV10E20u - - 2e-2 At1g47970 unknown protein C.G. S.X.
0.03 4e+0 34 Oryza sativa Os11g0158700 9639.m00528 - POX domain containing protein 1e-1 At2g35940 BLH1 (BEL1-LIKE HOMEODOMAIN 1) C.G. S.X.
0.10 1e-2 42 Populus trichocarpa PtpAffx.204038.1.S1_at pmrna7967 hypothetical protein - 8e-3 At5g52810 ornithine cyclodeaminase/mu-crystallin family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.12897.1.A1_at BJ218680 - - 3e-1 At3g22840 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) C.G. S.X.
0.02 1e-1 36 Vitis vinifera 1608319_at CF514762 hypothetical protein LOC100247293 - 2e-3 At4g08980 F-box family protein (FBW2) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.10111.1.A1_at BM380307 hypothetical protein LOC100217307 - 9e+0 At4g30180 transcription factor/ transcription regulator C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00013 Arginine and proline metabolism (Urea cycle and related metabolism)

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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