Gene omics information

Query gene ID At5g52810
Gene name ornithine cyclodeaminase/mu-crystallin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPS.X.H.G.
0.7385.5At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBS.X.H.G.
0.6781.6At3g60420825213-F:unknown;P:unknown;C:cellular_component unknown;OBFPMS.X.H.G.
0.4050.8At4g03450827913ankyrin repeat family proteinF:protein binding;P:unknown;C:unknown;MOPFBVAS.X.H.G.
0.135.8At3g56400824807WRKY70member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
125.899.9GSM244455Arabidopsis AtMYB30-ox_6 h_ Xanthomonas inoculated_biological rep1_exp1GSE9674Expression data from Arabidopsis plants misexpressing AtMYB30 after Xanthomonas inoculation at early timepoints
89.399.9GSM134457St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0
67.399.8E-MEXP-739-raw-cel-1099467330
63.299.8GSM134458St.Clair_1-83_323_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0
55.399.8E-MEXP-739-raw-cel-1099467303
54.899.8GSM134459St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5758Expression Level Polymorphism Project (ELP) - Mt-0
47.099.8GSM134369St.Clair_1-30_433_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
44.099.8E-MEXP-739-raw-cel-1099467321
43.399.8GSM134405St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1GSE5755Expression Level Polymorphism Project (ELP) - Tsu-1
43.199.8GSM134359St.Clair_1-20_361_Cvi-1_0.02%-silwet_Rep2_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At5g60060836128F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.021e-138At3g56300824797tRNA synthetase class I (C) family proteinF:cysteine-tRNA ligase activity, nucleotide binding, ATP binding;P:cysteinyl-tRNA aminoacylation, translation;C:cytoplasm;OBMFAPVC.G.S.X.
0.021e-138At1g22930838900T-complex protein 11F:unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.025e-136At5g15850831442COL1 (constans-like 1)Homologous to the flowering-time gene CONSTANS.C.G.S.X.
0.025e-136At5g43520834372DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFC.G.S.X.
0.015e-136At2g02150814746pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:endomembrane system;POMFBAC.G.S.X.
0.025e-136At1g71100843450RSW10 (RADIAL SWELLING 10)Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.C.G.S.X.
0.025e-136At1g32430840137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.83023.1.S1_atBQ081537--2e-2At1g53180unknown proteinC.G.S.X.
0.036e-548Hordeum vulgareHV10E20u_atHV10E20u--2e-2At1g47970unknown proteinC.G.S.X.
0.034e+034Oryza sativaOs11g01587009639.m00528-POX domain containing protein1e-1At2g35940BLH1 (BEL1-LIKE HOMEODOMAIN 1)C.G.S.X.
0.101e-242Populus trichocarpaPtpAffx.204038.1.S1_atpmrna7967hypothetical protein-8e-3At5g52810ornithine cyclodeaminase/mu-crystallin family proteinC.G.S.X.
0.035e-136Triticum aestivumTaAffx.12897.1.A1_atBJ218680--3e-1At3g22840ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)C.G.S.X.
0.021e-136Vitis vinifera1608319_atCF514762hypothetical protein LOC100247293-2e-3At4g08980F-box family protein (FBW2)C.G.S.X.
0.028e-134Zea maysZm.10111.1.A1_atBM380307hypothetical protein LOC100217307-9e+0At4g30180transcription factor/ transcription regulatorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00013Link to KaPPA-View 4Arginine and proline metabolism (Urea cycle and related metabolism)



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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