CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52790

Gene name CBS domain-containing protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g52790 835356 CBS domain-containing protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA S.X. H.G.
0.80 89.8 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At3g25930 822190 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:cellular_component unknown;P S.X. H.G.
0.38 46.7 At4g28890 829010 protein binding / ubiquitin-protein ligase/ zinc ion binding F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB S.X. H.G.
0.35 41.6 At1g50560 841477 CYP705A25 member of CYP705A S.X. H.G.
0.34 39.8 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.33 38.1 At5g06800 830570 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POFM S.X. H.G.
0.29 30.3 At2g35000 818064 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. S.X. H.G.
0.24 20.7 At5g65210 836646 TGA1 F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POM S.X. H.G.
0.21 15.8 At5g10280 830892 ATMYB92 (MYB DOMAIN PROTEIN 92) Encodes a putative transcription factor (MYB92). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.6 99.9 E-MEXP-635-raw-cel-912819840
125.7 99.9 E-MEXP-635-raw-cel-912819824
80.2 99.9 GSM291119 root - 21% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
71.5 99.9 GSM179958 Arabidopsis roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
70.9 99.9 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
66.3 99.8 GSM291024 root - 08% oxygen - 48h - A GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
54.1 99.8 GSM179959 Arabidopsis roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
54.0 99.8 GSM179972 Arabidopsis roots, mock treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
47.3 99.8 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
46.6 99.8 GSM157326 Hammond_3-10_Control-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 1e-5 52 At2g14520 815939 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMPFA C.G. S.X.
0.03 3e-3 44 At1g03270 838595 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPA C.G. S.X.
0.01 5e-2 40 At2g36420 818216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 7e-1 36 At4g24650 828567 ATIPT4 AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds C.G. S.X.
0.02 7e-1 36 At2g32520 817813 dienelactone hydrolase family protein F:hydrolase activity;P:biological_process unknown;C:chloroplast;BOMPAF C.G. S.X.
0.01 7e-1 36 At1g55040 841947 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVA C.G. S.X.
0.01 3e+0 34 At5g55340 835627 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOF C.G. S.X.
0.01 3e+0 34 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA C.G. S.X.
0.01 3e+0 34 At5g59000 836017 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max Gma.5265.1.S1_at BU550174 - - 7e-19 At4g33700 CBS domain-containing protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig11608_s_at Contig11608 - - 1e-2 At5g18690 AGP25 (ARABINOGALACTAN PROTEINS 25) C.G. S.X.
0.06 4e-1 38 Oryza sativa Os03g0674300 CB647641 - PGPS/D5 (Fragment) 5e-30 At2g14520 CBS domain-containing protein C.G. S.X.
0.22 8e-17 89 Populus trichocarpa PtpAffx.221605.1.S1_at pmrna38576 hypothetical protein - 5e-17 At5g52790 CBS domain-containing protein-related C.G. S.X.
0.03 2e-1 38 Triticum aestivum Ta.7696.3.S1_a_at BJ317380 - - 2e+0 At5g63300 structural constituent of ribosome C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1613922_s_at CA809290 hypothetical protein LOC100249812 - 1e+0 At3g22970 unknown protein C.G. S.X.
0.04 1e-6 54 Zea mays Zm.15775.1.S1_at CD446787 hypothetical protein LOC100274981 - 3e-5 At4g33700 CBS domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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