Gene omics information

Query gene ID At5g52790
Gene name CBS domain-containing protein-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g52790835356CBS domain-containing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAS.X.H.G.
0.8089.8At5g19970832119unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.4050.8At3g25930822190universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:cellular_component unknown;PS.X.H.G.
0.3846.7At4g28890829010protein binding / ubiquitin-protein ligase/ zinc ion bindingF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
0.3541.6At1g50560841477CYP705A25member of CYP705AS.X.H.G.
0.3439.8At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFS.X.H.G.
0.3338.1At5g06800830570myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POFMS.X.H.G.
0.2930.3At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.S.X.H.G.
0.2420.7At5g65210836646TGA1F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POMS.X.H.G.
0.2115.8At5g10280830892ATMYB92 (MYB DOMAIN PROTEIN 92)Encodes a putative transcription factor (MYB92).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
159.699.9E-MEXP-635-raw-cel-912819840
125.799.9E-MEXP-635-raw-cel-912819824
80.299.9GSM291119root - 21% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
71.599.9GSM179958Arabidopsis roots, air treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
70.999.9GSM176876AWP_AL_Txed_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
66.399.8GSM291024root - 08% oxygen - 48h - AGSE11558transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
54.199.8GSM179959Arabidopsis roots, air treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
54.099.8GSM179972Arabidopsis roots, mock treatment, replica 2GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
47.399.8GSM157315Hammond_3-5_Potassium-starved-root_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
46.699.8GSM157326Hammond_3-10_Control-root_Rep2_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.101e-552At2g14520815939CBS domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMPFAC.G.S.X.
0.033e-344At1g03270838595-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMFPAC.G.S.X.
0.015e-240At2g36420818216unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAC.G.S.X.
0.017e-136At4g24650828567ATIPT4AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cdsC.G.S.X.
0.027e-136At2g32520817813dienelactone hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:chloroplast;BOMPAFC.G.S.X.
0.017e-136At1g55040841947zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:unknown;C:nucleus;MBOPFVAC.G.S.X.
0.013e+034At5g55340835627long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family proteinF:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BPOFC.G.S.X.
0.013e+034At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAC.G.S.X.
0.013e+034At5g59000836017zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-346Glycine maxGma.5265.1.S1_atBU550174--7e-19At4g33700CBS domain-containing proteinC.G.S.X.
0.021e+034Hordeum vulgareContig11608_s_atContig11608--1e-2At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)C.G.S.X.
0.064e-138Oryza sativaOs03g0674300CB647641-PGPS/D5 (Fragment)5e-30At2g14520CBS domain-containing proteinC.G.S.X.
0.228e-1789Populus trichocarpaPtpAffx.221605.1.S1_atpmrna38576hypothetical protein-5e-17At5g52790CBS domain-containing protein-relatedC.G.S.X.
0.032e-138Triticum aestivumTa.7696.3.S1_a_atBJ317380--2e+0At5g63300structural constituent of ribosomeC.G.S.X.
0.026e-238Vitis vinifera1613922_s_atCA809290hypothetical protein LOC100249812-1e+0At3g22970unknown proteinC.G.S.X.
0.041e-654Zea maysZm.15775.1.S1_atCD446787hypothetical protein LOC100274981-3e-5At4g33700CBS domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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