CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52710

Gene name heavy-metal-associated domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.89 94.6 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV S.X. H.G.
0.67 81.6 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
248.5 100.0 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
219.4 100.0 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
210.2 100.0 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
184.3 100.0 GSM184545 Whole roots 2hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
180.8 100.0 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
157.8 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
147.9 99.9 GSM184505 Pericycle root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
142.6 99.9 GSM184538 Whole roots 2hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
129.9 99.9 GSM131342 AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
122.6 99.9 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.26 3e-31 137 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.14 2e-28 127 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV C.G. S.X.
0.17 4e-27 123 At5g52700 835347 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PM C.G. S.X.
0.07 3e-6 54 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 38 At4g23570 828457 SGT1A Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance. C.G. S.X.
0.01 2e-1 38 At3g24630 822059 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPV C.G. S.X.
0.01 2e-1 38 At1g56540 842107 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.45276.1.S1_at BG239549 - - 2e-1 At2g04530 CPZ C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig11710_at Contig11710 - - 2e-1 At2g17850 - C.G. S.X.
0.02 5e+0 34 Oryza sativa Os02g0545600 9630.m03248 - - 7e+0 At4g22920 NYE1 (NON-YELLOWING 1) C.G. S.X.
0.02 6e-2 40 Populus trichocarpa PtpAffx.5629.1.A1_at CV241420 - - 1e+0 At5g53880 unknown protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum Ta.13636.1.A1_at BQ171979 - - 1e-1 At5g52710 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1620649_at AY427191.1 - - 5e-1 At3g53550 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.11631.1.A1_at BM379442 brittle stalk2 - 1e+0 At4g15460 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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