CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52690

Gene name heavy-metal-associated domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.84 91.9 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.78 88.6 At3g28510 822481 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV S.X. H.G.
0.76 87.4 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV S.X. H.G.
0.74 86.1 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.67 81.6 At1g59171 842233 ATP binding / inositol pentakisphosphate 2-kinase F:inositol pentakisphosphate 2-kinase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.63 78.1 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein S.X. H.G.
0.59 74.7 At3g13090 820497 ATMRP8 member of MRP subfamily S.X. H.G.
0.48 62.5 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins S.X. H.G.
0.43 55.3 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
445.9 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
228.5 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
222.4 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
217.9 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
205.5 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
168.4 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
165.6 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
160.2 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
152.5 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
138.7 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 1e-169 595 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV C.G. S.X.
0.48 5e-83 307 At5g52700 835347 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PM C.G. S.X.
0.26 9e-32 137 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.29 1e-18 93 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.17 7e-5 48 At5g52720 835349 metal ion binding F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.04 7e-2 38 At1g70360 843372 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 3e-1 36 At5g32450 833204 RNA recognition motif (RRM)-containing protein F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMO C.G. S.X.
0.01 1e+0 34 At3g50010 824163 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 1e+0 34 At3g50140 824176 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;MPOFVBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Glycine max GmaAffx.91247.1.S1_at CF806972 - - 4e+0 At5g43401 - C.G. S.X.
0.04 8e+0 30 Hordeum vulgare HU12N23u_s_at HU12N23u - - 5e-1 At1g45145 ATTRX5 C.G. S.X.
0.03 8e+0 32 Oryza sativa Os04g0155100 9632.m00627 - - 1e+0 At3g13130 unknown protein C.G. S.X.
0.03 1e+0 34 Populus trichocarpa Ptp.914.1.A1_at CV230451 hypothetical protein - 1e+0 At5g52690 heavy-metal-associated domain-containing protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.31410.1.S1_at CA616653 - - 3e-1 At4g33130 - C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1617966_at CF516835 - - 4e+0 At5g01610 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.3473.1.A1_at AY103936.1 hypothetical protein LOC100279183 - 5e+0 At5g22160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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