CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52680

Gene name heavy-metal-associated domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV S.X. H.G.
0.89 94.6 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.40 50.8 At3g13090 820497 ATMRP8 member of MRP subfamily S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
763.0 100.0 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
694.8 100.0 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
656.0 100.0 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
413.3 100.0 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
185.7 100.0 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
161.6 99.9 GSM226552 Slice10JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
93.2 99.9 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.6 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
68.2 99.9 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
60.4 99.8 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 2e-169 595 At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.44 1e-74 280 At5g52700 835347 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PM C.G. S.X.
0.14 1e-28 127 At5g52710 835348 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMFBPVA C.G. S.X.
0.19 6e-9 61 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P C.G. S.X.
0.02 1e+0 34 At3g21465 821700 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 6e+0 32 At5g41840 834189 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.02 6e+0 32 At5g45670 834606 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM C.G. S.X.
0.02 6e+0 32 At5g51680 835242 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 36 Glycine max PsAffx.psZS006xF23f_s_at PsAffx.psZS006xF23f - - 1e+0 At1g49400 emb1129 (embryo defective 1129) C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HU12N23u_s_at HU12N23u - - 5e-1 At1g45145 ATTRX5 C.G. S.X.
0.03 7e-1 36 Oryza sativa Os06g0103000 9634.m00030 - - 3e-1 At3g29780 RALFL27 (ralf-like 27) C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.11427.1.A1_at CV266061 hypothetical protein - 4e+0 At5g59030 COPT1 (copper transporter 1) C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.111592.1.S1_at CA637172 - - 3e+0 At5g52680 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1612965_at CF518997 hypothetical protein LOC100265776 - 3e-19 At4g21585 ENDO4 (endonuclease 4) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17643.1.S1_at CK368600 - - 2e-1 At5g54850 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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