Gene omics information

Query gene ID At5g52570
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2319.3At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.S.X.H.G.
0.3948.4At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.S.X.H.G.
0.3846.7At1g55960842047-F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOS.X.H.G.
0.3338.1At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMS.X.H.G.
0.3235.7At5g42760834285-F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMFS.X.H.G.
0.3133.8At1g64500842758glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOFS.X.H.G.
0.2726.2At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.S.X.H.G.
0.2420.7At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.099.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
46.699.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
46.499.8GSM142663NE001_ATH1_A1-Evans-w20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
45.099.8GSM142666NE001_ATH1_A4-Evans-m20GSE6154Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
34.199.7GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
30.699.7GSM297382At.StarchSD.WTSS3.SS3R1L1GSE11708Global gene expression in Atss3 mutant and WT over short day diurnal cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.664e-180630At4g25700828675BETA-OHASE 1 (BETA-HYDROXYLASE 1)Converts beta-carotene to zeaxanthin via cryptoxanthin.C.G.S.X.
0.014e-136At5g02400830937PLL2Encodes a protein with similarity to the POL locus which is a novel protein phosphatase 2C. Ubiquitously expressed. No phenotype observed in homozygous null mutant background.C.G.S.X.
0.014e-136At4g37670829921GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family proteinF:amino-acid N-acetyltransferase activity, N-acetyltransferase activity;P:arginine biosynthetic process, amino acid biosynthetic process, metabolic process;C:cytoplasm;BOAFPC.G.S.X.
0.014e-136At3g51490824312TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity;P:in 6 processes;C:plant-type vacuole membrane, membrane;BFMPOAC.G.S.X.
0.014e-136At2g18960816413AHA1 (ARABIDOPSIS H+ ATPASE 1)Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.C.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.412e-32141Glycine maxGma.15863.1.S1_s_atCD413163--1e-32At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)C.G.S.X.
0.033e+032Hordeum vulgareHVSMEg0002C10r2_atHVSMEg0002C10r2--1e+0At5g17950unknown proteinC.G.S.X.
0.152e-1171Oryza sativaOs03g01251009631.m00248-Beta-carotene hydroxylase1e-11At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)C.G.S.X.
0.321e-39165Populus trichocarpaPtp.4822.1.S1_s_atCK089334--2e-38At4g25700BETA-OHASE 1 (BETA-HYDROXYLASE 1)C.G.S.X.
0.061e-448Triticum aestivumTa.27546.1.S1_atBT009105.1--2e+0At4g25700BETA-OHASE 1 (BETA-HYDROXYLASE 1)C.G.S.X.
0.401e-35149Vitis vinifera1617541_s_atCB342503hypothetical protein LOC100268009-6e-35At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)C.G.S.X.
0.071e-240Zea maysZm.12004.1.S1_atCN844706beta-carotene hydroxylase-4e-2At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0016123The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids.
XGO:0016119The chemical reactions and pathways involving carotenes, hydrocarbon carotenoids.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00063Link to KaPPA-View 4Carotenoid and abscisic acid biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00906Link to KEGG PATHWAYCarotenoid biosynthesis
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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