CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52320

Gene name CYP96A4

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At5g52320 835308 CYP96A4 member of CYP96A S.X. H.G.
0.40 50.8 At1g19670 838554 ATCLH1 (ARABIDOPSIS THALIANA CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. S.X. H.G.
0.40 50.8 At3g25760 822167 AOC1 (ALLENE OXIDE CYCLASE 1) encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during senescence, a process that involves jasmonic acid signalling pathway. S.X. H.G.
0.40 50.8 At5g42650 834273 AOS (ALLENE OXIDE SYNTHASE) Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity. S.X. H.G.
0.03 0.6 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
87.2 99.9 E-MEXP-449-raw-cel-676423253
75.6 99.9 E-ATMX-19-raw-cel-1375547530
60.9 99.8 GSM152139 Col-0 drought 3 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
59.4 99.8 E-ATMX-19-raw-cel-1375547462
54.7 99.8 E-ATMX-19-raw-cel-1375547496
54.2 99.8 GSM152135 Col-0 drought 1 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
49.6 99.8 E-ATMX-19-raw-cel-1375547479
42.8 99.8 E-MEXP-449-raw-cel-676423218
41.3 99.8 GSM152137 Col-0 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
37.6 99.7 GSM152143 siz1-3 drought 2 GSE6583 Genome-wide transcriptome analysis of Arabidopsis and siz1-3 response to drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 0 1211 At1g65340 842842 CYP96A3 member of CYP96A C.G. S.X.
0.15 3e-22 107 At2g21910 816727 CYP96A5 member of CYP96A C.G. S.X.
0.36 2e-17 91 At1g57750 842150 CYP96A15 (CYTOCHROME P450 96 A1) Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis. C.G. S.X.
0.25 2e-13 77 At2g23180 816850 CYP96A1 member of CYP96A C.G. S.X.
0.22 3e-9 63 At4g39480 830103 CYP96A9 (CYTOCHROME P450 96 A9) member of CYP96A C.G. S.X.
0.11 2e-7 57 At4g39500 830104 CYP96A11 member of CYP96A C.G. S.X.
0.06 8e-7 56 At4g39490 3770599 CYP96A10 member of CYP96A C.G. S.X.
0.11 3e-6 54 At5g02900 831752 CYP96A13 member of CYP96A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 34 Glycine max GmaAffx.82633.1.S1_at BM178737 - - 3e-3 At3g48520 CYP94B3 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare HU11J18u_x_at HU11J18u - - 4e+0 At2g04020 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.02 6e+0 34 Oryza sativa Os02g0556800 AK100187.1 - Conserved hypothetical protein 3e-2 At1g04445 zinc finger (C2H2 type) family protein C.G. S.X.
0.05 2e-5 52 Populus trichocarpa PtpAffx.207156.1.S1_at pmrna14196 cytochrome P450 - 1e-5 At2g23180 CYP96A1 C.G. S.X.
0.02 3e+0 34 Triticum aestivum Ta.12236.1.A1_at BQ171916 - - 2e-1 At2g04925 - C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1616732_at CB971918 - - 2e-1 At3g62550 universal stress protein (USP) family protein C.G. S.X.
0.01 1e+0 34 Zea mays Zm.5895.1.A1_at BM073861 hypothetical protein LOC100193058 - 8e-7 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00903 Limonene and pinene degradation
00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
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