Gene omics information

Query gene ID At5g52200
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g52200835296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPVS.X.H.G.
0.3133.8At1g14000837960VIK (VH1-INTERACTING KINASE)Encodes a protein with similarity to members of the C1 subgroup of MAP kinase kinase kinases. Interacts physically with the receptor kinase BRL2/VH1 and appears to be involved in auxin and brassinosteriod signaling.S.X.H.G.
0.3032.1At2g27490817294ATCOAEAT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA.S.X.H.G.
0.2930.3At1g80950844435phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPFS.X.H.G.
0.2930.3At3g24350822024SYP32 (SYNTAXIN OF PLANTS 32)member of Glycoside Hydrolase Family 17S.X.H.G.
0.2930.3At3g27310822350PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo.S.X.H.G.
0.2930.3At1g21380838737VHS domain-containing protein / GAT domain-containing proteinF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, intracellular;MFPOBS.X.H.G.
0.2930.3At5g40930834094TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)Form of TOM20, which is a component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteinsS.X.H.G.
0.2726.2At3g05710819740SYP43 (SYNTAXIN OF PLANTS 43)member of SYP4 Gene FamilyS.X.H.G.
0.2624.4At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.499.5GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
12.199.3GSM142830GM001_ATH1_A14-Torres-4N3_repeat2GSE6176Impact of Type III effectors on plant defense responses
10.699.2GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
10.599.2GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.899.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
8.699.0GSM184843Arabidopsis, root, longitudinal zone 3, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-446At5g23680832433sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVC.G.S.X.
0.021e-344At5g50210835086QS (QUINOLINATE SYNTHASE)Encodes an Fe-S binding protein with quinolinate synthase (QS) activity and cysteine desulfurase activator activity. The QS activity was demonstrated by functional complementation of corresponding E. coli mutants and complementation of embryo-lethal phenotypes of the QS homozygous null allele in Arabidopsis. The SufE domain of the protein also stimulates the cysteine desulfurase activity of CpNifS (AT1G08490) in vitro. This protein binds a (4Fe-Su)2+ cluster in its NadA domain and is localized in the chloroplast.C.G.S.X.
0.031e-344At5g25590832634-F:unknown;P:N-terminal protein myristoylation;C:unknown;MOFPBVAC.G.S.X.
0.041e-344At4g19550827697transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex;OMPFBVC.G.S.X.
0.031e-344At1g68140843142-F:molecular_function unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.015e-342At5g51070835180ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)ATP-dependent Clp protease regulatory subunitC.G.S.X.
0.035e-342At3g28200822446peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBC.G.S.X.
0.045e-342At3g57950824964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.103e-859Glycine maxGma.14684.1.S1_atCD412709--3e-8At5g52200unknown proteinC.G.S.X.
0.091e-756Hordeum vulgareContig8836_atContig8836--5e-7At5g52200unknown proteinC.G.S.X.
0.094e-1789Oryza sativaOs05g0301600AK073928.1-Protein phosphatase inhibitor 2 (IPP-2) familyprotein4e-17At5g52200unknown proteinC.G.S.X.
0.081e-448Populus trichocarpaPtpAffx.1250.1.S1_a_atCV238376--1e-4At5g52200unknown proteinC.G.S.X.
0.143e-1375Triticum aestivumTaAffx.8480.1.S1_atCA624685--3e-13At5g52200unknown proteinC.G.S.X.
0.053e-444Vitis vinifera1614144_atCA809569hypothetical protein LOC100261582-2e-3At5g52200unknown proteinC.G.S.X.
0.041e-136Zea maysZmAffx.783.1.S1_atAI745854--8e-7At1g51730RWD domain-containing proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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