Gene omics information

Query gene ID At5g52130
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.146.8At5g52130835289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3235.7At1g77910844126unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.157.8At2g13720815856ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPVS.X.H.G.
0.135.8At2g10465815506transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.114.1At4g00690828036ULP1B (UB-LIKE PROTEASE 1B)F:cysteine-type peptidase activity;P:proteolysis;C:chloroplast;MPFOVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
2017.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
525.8100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
252.7100.0GSM133766Lindsey_1-18_torpedo-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
163.599.9GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
135.099.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
98.699.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
79.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.499.9E-MEXP-509-raw-cel-829148348
72.499.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
70.399.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.034e-342At4g18770827611MYB98 (myb domain protein 98)MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.C.G.S.X.
0.016e-238At3g48770824038ATP binding / DNA bindingF:DNA binding, ATP binding;P:biological_process unknown;C:chloroplast;PMBOFAC.G.S.X.
0.022e-136At1g03740839423ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAC.G.S.X.
0.029e-134At5g06260830513nucleolar protein-relatedF:calcium ion binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MOPFC.G.S.X.
0.029e-134At3g06460819823GNS1/SUR4 membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPVC.G.S.X.
0.029e-134At2g36770818249UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMVBOFC.G.S.X.
0.019e-134At2g19130816430S-locus lectin protein kinase family proteinF:protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAC.G.S.X.
0.029e-134At2g15370816029FUT5Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Glycine maxGmaAffx.72561.2.S1_atBG155858--2e-10At4g17310unknown proteinC.G.S.X.
0.045e-134Hordeum vulgareContig13099_atContig13099--1e+0At5g52130unknown proteinC.G.S.X.
0.042e+034Oryza sativaOs03g0202500AK071140.1-Cyclin-like F-box domain containing protein3e+0At5g57510unknown proteinC.G.S.X.
0.041e+034Populus trichocarpaPtp.7987.1.S1_atDN503037hypothetical protein-7e-1At5g52130unknown proteinC.G.S.X.
0.044e+032Triticum aestivumTaAffx.85843.1.S1_atCA619080--1e-1At2g20208LCR60 (Low-molecular-weight cysteine-rich 60)C.G.S.X.
0.047e-236Vitis vinifera1622590_atCD800779--2e-1At5g52130unknown proteinC.G.S.X.
0.044e-134Zea maysZm.8910.1.A1_atCF646418protein binding protein-2e+0At5g52130unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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