Gene omics information

Query gene ID At5g52060
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g52060835281ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.S.X.H.G.
0.5065.3At3g23820821965GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6)UDP-D-glucuronate 4-epimeraseS.X.H.G.
0.3338.1At1g05850837095POM1 (POM-POM1)Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants.S.X.H.G.
0.1811.4At3g53420824510PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf devS.X.H.G.
0.146.8At5g05170830399CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
15.599.5GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with salt
12.499.3GSM131131AtGen_B-17_2-3-1_REP2_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
12.299.3GSM142750MJ001_ATH1_A1-jones-WT1GSE6165The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
12.299.3GSM266671Arabidopsis, root cells, cortex, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.199.3GSM131143AtGen_B-29_3-1-1_REP3_ATH1GSE5615AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
12.099.3GSM27366lec1-1 StemGSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.032e-344At5g44570834484unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.022e-344At5g19750832095peroxisomal membrane 22 kDa family proteinF:molecular_function unknown;P:biological_process unknown;C:peroxisomal membrane, chloroplast, chloroplast envelope;MBPOFVAC.G.S.X.
0.028e-342At3g50140824176unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;MPOFVBAC.G.S.X.
0.038e-342At2g27750817321nucleolar matrix protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBC.G.S.X.
0.013e-240At4g29780829100unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MPFC.G.S.X.
0.033e-240At3g44950823630glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFVAC.G.S.X.
0.013e-240At1g29230839797CIPK18 (CBL-INTERACTING PROTEIN KINASE 18)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).C.G.S.X.
0.011e-138At5g49665835029zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:plasma membrane;BPOMFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e-240Glycine maxHgAffx.12256.1.S1_atCB375726--2e-1At3g43520unknown proteinC.G.S.X.
0.026e-238Hordeum vulgareContig8466_s_atContig8466--8e-2At5g44570unknown proteinC.G.S.X.
0.041e-346Oryza sativaOs.6042.1.S1_at---0C.G.S.X.
0.063e-344Populus trichocarpaPtp.2339.1.S1_atCK092795hypothetical protein-8e-1At5g07220ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3)C.G.S.X.
0.043e-240Triticum aestivumTaAffx.93952.1.S1_x_atBG909693--9e-3At5g52060ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)C.G.S.X.
0.062e-342Vitis vinifera1620986_atCF372684--2e-2At2g31957LCR75 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 75)C.G.S.X.
0.031e-240Zea maysZm.8848.1.A1_atBM075900--1e-2At5g44570unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0042981Any process that modulates the occurrence or rate of cell death by apoptosis.
CGO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
LGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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