Gene omics information

Query gene ID At5g52000
Gene name IMPA-8 (IMPORTIN ALPHA ISOFORM 8)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7687.4At5g52000835275IMPA-8 (IMPORTIN ALPHA ISOFORM 8)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.S.X.H.G.
0.9095.1At4g18500827582unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8693.1At3g16930820948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8391.4At4g30540829177glutamine amidotransferase class-I domain-containing proteinF:catalytic activity;P:unknown;C:cellular_component unknown;OBAFPVMS.X.H.G.
0.8391.4At4g20290827776unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMS.X.H.G.
0.8290.9At1g18220838402ATPUP9Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.S.X.H.G.
0.8290.9At2g01800814711COP1-interacting protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVAS.X.H.G.
0.7888.6At1g501903767425-F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknownS.X.H.G.
0.7586.9At4g18850827619unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7486.1At5g09340830793ubiquitin, putativeF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
424.3100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
400.4100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
284.9100.0GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
240.7100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
238.8100.0GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
225.4100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.5100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
211.4100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.4100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
182.1100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.372e-50200At1g32880840182importin alpha-1 subunit, putativeF:protein transporter activity, binding;P:intracellular protein transport;C:cellular_component unknown;MPFOC.G.S.X.
0.384e-33143At5g49310834991IMPA-5 (IMPORTIN ALPHA ISOFORM 5)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
0.273e-963At3g06720819857IMPA-1 (IMPORTIN ALPHA ISOFORM 1)Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
0.024e-240At5g50480835116NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFOC.G.S.X.
0.014e-240At2g35110818077GRL (GNARLED)Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs.C.G.S.X.
0.012e-138At1g02690839517IMPA-6 (IMPORTIN ALPHA ISOFORM 6)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-138Glycine maxGmaAffx.29220.1.S1_atBU965256--1e-2At2g01554unknown proteinC.G.S.X.
0.022e-240Hordeum vulgareContig4129_atContig4129--9e-26At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
0.029e-550Oryza sativaOs01g0253300AB004660.1-Importin alpha 26e-24At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
0.061e-242Populus trichocarpaPtpAffx.210864.1.S1_atpmrna21339hypothetical protein-1e-64At4g16143IMPA-2 (IMPORTIN ALPHA ISOFORM 2)C.G.S.X.
0.032e-138Triticum aestivumTaAffx.112914.1.S1_atCA619852--1e-12At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)C.G.S.X.
0.023e+032Vitis vinifera1619833_atCF515145--1e+0At5g50345-C.G.S.X.
0.047e-238Zea maysZm.4898.2.A1_atAY108183.1--6e-11At1g09270IMPA-4 (IMPORTIN ALPHA ISOFORM 4)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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