CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g52000

Gene name IMPA-8 (IMPORTIN ALPHA ISOFORM 8)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At5g52000 835275 IMPA-8 (IMPORTIN ALPHA ISOFORM 8) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. S.X. H.G.
0.90 95.1 At4g18500 827582 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At3g16930 820948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At4g30540 829177 glutamine amidotransferase class-I domain-containing protein F:catalytic activity;P:unknown;C:cellular_component unknown;OBAFPVM S.X. H.G.
0.83 91.4 At4g20290 827776 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM S.X. H.G.
0.82 90.9 At1g18220 838402 ATPUP9 Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. S.X. H.G.
0.82 90.9 At2g01800 814711 COP1-interacting protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBVA S.X. H.G.
0.78 88.6 At1g50190 3767425 - F:molecular_function unknown;P:intracellular signaling cascade;C:cellular_component unknown S.X. H.G.
0.75 86.9 At4g18850 827619 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.74 86.1 At5g09340 830793 ubiquitin, putative F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
424.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
400.4 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
284.9 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
240.7 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
238.8 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
225.4 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.5 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
211.4 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
199.4 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
182.1 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 2e-50 200 At1g32880 840182 importin alpha-1 subunit, putative F:protein transporter activity, binding;P:intracellular protein transport;C:cellular_component unknown;MPFO C.G. S.X.
0.38 4e-33 143 At5g49310 834991 IMPA-5 (IMPORTIN ALPHA ISOFORM 5) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.27 3e-9 63 At3g06720 819857 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
0.02 4e-2 40 At5g50480 835116 NF-YC6 (NUCLEAR FACTOR Y, SUBUNIT C6) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.01 4e-2 40 At2g35110 818077 GRL (GNARLED) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. C.G. S.X.
0.01 2e-1 38 At1g02690 839517 IMPA-6 (IMPORTIN ALPHA ISOFORM 6) Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.29220.1.S1_at BU965256 - - 1e-2 At2g01554 unknown protein C.G. S.X.
0.02 2e-2 40 Hordeum vulgare Contig4129_at Contig4129 - - 9e-26 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.02 9e-5 50 Oryza sativa Os01g0253300 AB004660.1 - Importin alpha 2 6e-24 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.06 1e-2 42 Populus trichocarpa PtpAffx.210864.1.S1_at pmrna21339 hypothetical protein - 1e-64 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.112914.1.S1_at CA619852 - - 1e-12 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1619833_at CF515145 - - 1e+0 At5g50345 - C.G. S.X.
0.04 7e-2 38 Zea mays Zm.4898.2.A1_at AY108183.1 - - 6e-11 At1g09270 IMPA-4 (IMPORTIN ALPHA ISOFORM 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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