CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g51830

Gene name pfkB-type carbohydrate kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At5g51830 835258 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:response to cadmium ion;C:cellular_component unknown;BOPAMF S.X. H.G.
0.60 75.7 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.20 14.4 At1g30620 839942 MUR4 (MURUS 4) encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. S.X. H.G.
0.18 11.4 At5g54860 835577 integral membrane transporter family protein F:transporter activity;P:transport;C:endomembrane system, membrane;OPBMAF S.X. H.G.
0.04 0.9 At3g09010 820053 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
171.6 100.0 E-MEXP-1443-raw-cel-1581869745
160.6 99.9 E-MEXP-1443-raw-cel-1581869803
74.3 99.9 GSM134350 St.Clair_1-11_333_Col-0_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
65.9 99.8 GSM134386 St.Clair_1-47_334_Est_0.30mM-SA-in-0.02%-silwet_Rep2_ATH1 GSE5754 Expression Level Polymorphism Project (ELP) - Est
44.6 99.8 GSM134351 St.Clair_1-12_407_Col-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5752 Expression Level Polymorphism Project (ELP) - Col-0
43.2 99.8 GSM142829 GM001_ATH1_A11-Torres-5N3 GSE6176 Impact of Type III effectors on plant defense responses
40.6 99.8 GSM134405 St.Clair_1-102_350_Tsu-1_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5755 Expression Level Polymorphism Project (ELP) - Tsu-1
39.2 99.8 E-MEXP-546-raw-cel-863289532
37.6 99.7 GSM134439 St.Clair_1-64_270b_Kin-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5757 Expression Level Polymorphism Project (ELP) - Kin-0
35.5 99.7 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 1e-20 101 At1g66430 842961 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:chloroplast, chloroplast stroma;BOPAMF C.G. S.X.
0.05 1e-4 48 At4g10260 826617 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:cellular_component unknown;BOPAMF C.G. S.X.
0.01 3e-2 40 At4g18290 827555 KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2) One of the four members of the Shaker family encoding guard cell potassium inward channels. Critical to stomatal opening induced by blue light. Critical to circadian rhythm of stomatal opening. Involved in plant development in response to high light intensity. Under high light intensity, the mutant plant produced less biomass compared to the wild type. C.G. S.X.
0.04 3e-2 40 At1g06020 837111 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMF C.G. S.X.
0.01 1e-1 38 At5g09760 830836 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, chloroplast, plant-type cell wall;PBFOM C.G. S.X.
0.04 1e-1 38 At1g06030 837112 pfkB-type carbohydrate kinase family protein F:kinase activity, ribokinase activity;P:D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:unknown;BOPAMF C.G. S.X.
0.01 5e-1 36 At5g65240 836649 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.01 5e-1 36 At2g03140 814843 CAAX amino terminal protease family protein F:unknown;P:proteolysis;C:nucleus;MBOFPVA C.G. S.X.
0.01 2e+0 34 At5g49660 835028 leucine-rich repeat transmembrane protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 3e-31 137 Glycine max GmaAffx.66826.1.S1_at BU577885 - - 2e-31 At5g51830 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.03 1e-9 63 Hordeum vulgare Contig7473_at Contig7473 - - 6e-17 At1g66430 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.05 6e-2 40 Oryza sativa Os08g0113100 AF429947.1 - Fructokinase 2 8e-13 At4g10260 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.34 9e-22 105 Populus trichocarpa PtpAffx.37287.1.A1_at CV257770 hypothetical protein - 8e-22 At5g51830 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.02 5e-1 36 Triticum aestivum TaAffx.112199.1.S1_at CA626124 - - 2e-7 At1g29250 nucleic acid binding C.G. S.X.
0.10 1e-14 79 Vitis vinifera 1622806_at CB009073 hypothetical protein LOC100258640 - 6e-87 At1g66430 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.03 6e-2 38 Zea mays Zm.5169.1.A1_at AY104222.1 Fructokinase 1 - 7e-4 At1g06020 pfkB-type carbohydrate kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00020 Hexose phosphate pool

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00051 Fructose and mannose metabolism
00500 Starch and sucrose metabolism
00520 Amino sugar and nucleotide sugar metabolism
01100 Metabolic pathways
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