CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g51680

Gene name hydroxyproline-rich glycoprotein family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At5g51680 835242 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;MPOBFVA S.X. H.G.
0.97 97.6 At1g61590 842455 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA S.X. H.G.
0.97 97.6 At2g32300 817791 UCC1 (UCLACYANIN 1) Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. S.X. H.G.
0.97 97.6 At4g13580 826991 disease resistance-responsive family protein F:molecular_function unknown;P:unknown;C:endomembrane system;PB S.X. H.G.
0.97 97.6 At5g66390 836771 peroxidase 72 (PER72) (P72) (PRXR8) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOB S.X. H.G.
0.94 96.7 At1g71740 843504 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At2g39430 818528 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:lignan biosynthetic process;C:endomembrane system;PABFO S.X. H.G.
0.93 96.4 At2g30210 817571 LAC3 (laccase 3) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). S.X. H.G.
0.93 96.4 At2g36100 818183 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At2g27370 817280 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
639.5 100.0 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
283.8 100.0 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
268.0 100.0 GSM184899 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
217.2 100.0 GSM266673 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
214.8 100.0 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
145.1 99.9 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
144.5 99.9 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
143.6 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
124.4 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
72.6 99.9 GSM266674 Arabidopsis, root cells, endodermis and quiescent center, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-4 46 At2g26530 817194 AR781 unknown function C.G. S.X.
0.01 8e-3 42 At2g28350 817382 ARF10 (AUXIN RESPONSE FACTOR 10) Involved in root cap cell differentiation. C.G. S.X.
0.02 3e-2 40 At5g28040 832874 transcription regulator F:transcription regulator activity;P:unknown;C:unknown;PMBOF C.G. S.X.
0.02 3e-2 40 At5g17390 831605 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;MOPVFB C.G. S.X.
0.01 5e-1 36 At5g63550 836474 - F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.02 5e-1 36 At4g03110 828090 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
0.02 5e-1 36 At3g08640 820011 alphavirus core protein family F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;MBPOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.4831.1.S1_at BI941763 - - 1e-2 At2g14660 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig24296_at Contig24296 - - 2e-2 At5g03210 unknown protein C.G. S.X.
0.03 3e-1 38 Oryza sativa Os03g0189900 AK108273.1 - Hypothetical protein 9e+0 At5g46780 VQ motif-containing protein C.G. S.X.
0.07 8e-10 65 Populus trichocarpa Ptp.2996.2.A1_at CV255177 hypothetical protein - 4e-10 At5g51680 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.121228.1.S1_at BG907241 - - 6e-3 At3g08640 alphavirus core protein family C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1614382_at CF215690 hypothetical protein LOC100245592 - 4e+0 At5g14340 AtMYB40 (myb domain protein 40) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.2915.1.A1_at AW091226 - - 1e+0 At3g55610 P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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